| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-08-13 22:28 -0400 (Tue, 13 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | |||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-08-10 16:01:02 -0400 (Sat, 10 Aug 2024) |
| EndedAt: 2024-08-10 16:05:07 -0400 (Sat, 10 Aug 2024) |
| EllapsedTime: 245.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-08-10 16:01:37.939][biodb::testContext]
biodb.INFO [2024-08-10 16:01:37.941][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:01:37.942][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-08-10 16:01:37.943][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:01:37.944][biodb::testContext]
biodb.INFO [2024-08-10 16:01:37.951][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:01:37.953][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:01:37.961][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:37.962][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:01:37.963][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:01:37.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:37.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:37.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:37.967][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:01:37.986][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:01:37.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:37.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:37.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:37.990][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:01:37.991][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:01:37.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:37.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:37.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:37.995][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:01:37.996][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:01:37.997][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:01:37.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:37.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.001][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:01:38.002][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:01:38.003][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:01:38.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.006][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:01:38.007][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:01:38.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.011][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:01:38.012][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:01:38.013][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:01:38.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.017][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:01:38.018][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:01:38.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.021][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:01:38.023][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:01:38.024][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:01:38.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.027][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:01:38.028][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:01:38.029][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:01:38.030][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:01:38.031][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:01:38.032][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:01:38.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.036][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:01:38.037][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:01:38.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.041][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:01:38.042][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:01:38.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.045][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:01:38.046][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:01:38.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.050][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:01:38.051][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:01:38.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.055][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:01:38.056][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:01:38.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.059][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:01:38.060][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:01:38.064][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:01:38.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.067][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:01:38.068][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:01:38.069][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:01:38.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.076][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:01:38.112][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.134][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:01:38.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.136][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:38.137][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.138][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.139][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.140][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.141][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:01:38.141][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:38.142][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.143][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:01:38.144][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:38.145][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.146][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.147][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:38.147][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:38.147][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:38.147][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:01:38.147][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:01:38.148][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:38.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.150][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:38.151][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.152][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.152][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.153][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:38.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:38.156][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.157][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.158][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:01:38.159][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.160][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:01:38.161][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.162][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:38.163][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.165][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.166][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.166][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:01:38.167][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:38.168][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.169][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:01:38.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:38.171][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:01:38.172][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:01:38.173][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:38.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.176][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:38.177][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.178][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.179][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.180][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:38.181][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:38.182][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.183][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.184][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:01:38.185][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.186][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:01:38.187][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.188][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:38.189][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.189][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.190][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.191][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.192][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:01:38.193][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:38.194][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.195][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:01:38.196][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:38.196][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.197][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.198][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.199][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:38.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.202][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:38.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.203][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.204][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.205][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.206][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:38.207][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:38.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.208][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.209][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:01:38.211][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.212][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:01:38.213][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.213][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:38.214][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.215][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.216][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.217][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.218][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:01:38.219][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:38.220][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.220][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:01:38.221][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:38.222][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.223][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.224][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.225][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:01:38.226][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:38.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.230][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.231][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.231][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:38.232][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:38.233][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.234][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:01:38.238][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:38.238][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.314][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:01:38.320][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:01:38.321][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:01:38.323][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:01:38.324][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:01:38.326][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:01:38.327][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:01:38.328][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:01:38.330][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:01:38.331][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:01:38.332][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:01:38.334][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:01:38.335][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:01:38.336][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:01:38.338][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:01:38.339][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:01:38.340][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:01:38.342][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:01:38.343][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:01:38.344][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:01:38.346][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:01:38.347][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:01:38.349][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:01:38.350][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:01:38.351][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:01:38.353][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:01:38.354][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:01:38.355][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:01:38.357][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:01:38.358][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:01:38.359][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:01:38.361][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:01:38.362][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:01:38.363][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:01:38.365][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:01:38.366][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:01:38.367][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:01:38.382][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:01:38.383][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:01:38.384][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:01:38.386][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:01:38.387][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:01:38.388][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:01:38.390][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:01:38.391][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:01:38.393][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:01:38.394][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:01:38.395][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:01:38.397][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:01:38.398][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:01:38.399][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:01:38.401][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:01:38.402][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:01:38.404][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:01:38.405][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:01:38.406][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:01:38.408][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:01:38.409][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:01:38.410][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:01:38.412][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:01:38.413][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:01:38.414][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:01:38.416][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:01:38.417][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:01:38.419][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:01:38.420][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:01:38.421][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:01:38.423][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:01:38.424][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:01:38.425][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:01:38.427][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:01:38.428][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:01:38.429][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:01:38.431][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:01:38.432][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:01:38.433][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:01:38.435][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:01:38.436][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:01:38.437][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:01:38.439][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:01:38.440][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:01:38.441][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:01:38.443][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:01:38.449][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:01:38.450][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:01:38.454][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:01:38.454][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.456][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:01:38.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:38.561][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-08-10 16:01:38.570][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-08-10 16:01:38.572][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.573][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.574][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.575][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:01:38.575][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.577][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.578][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-08-10 16:01:38.579][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:01:38.580][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:01:38.581][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.582][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-08-10 16:01:38.582][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-08-10 16:01:38.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-08-10 16:01:38.584][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:01:38.585][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:01:38.585][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:01:38.585][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:01:38.586][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:01:38.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.588][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.589][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:01:38.590][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:01:38.590][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:01:38.591][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:01:38.592][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:38.592][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-08-10 16:01:38.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:01:38.594][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:01:38.595][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:01:38.595][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-08-10 16:01:38.595][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-08-10 16:01:38.601][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:01:38.602][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:01:38.604][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-08-10 16:01:38.605][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:01:38.606][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:01:38.608][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:01:38.633][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-08-10 16:01:38.634][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-08-10 16:01:38.639][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-08-10 16:01:38.642][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-08-10 16:01:38.647][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:01:38.648][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:01:38.649][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-08-10 16:01:38.650][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-08-10 16:01:38.659][biodb::testThat]
biodb.INFO [2024-08-10 16:01:38.660][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:01:38.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:38.661][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:38.665][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-08-10 16:01:38.666][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:38.670][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:38.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:38.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:38.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:38.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:38.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:38.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:38.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:38.703][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.722][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:38.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:38.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.724][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.752][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:38.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:38.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:38.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:38.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:38.775][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.777][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:38.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.781][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:38.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:38.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:38.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.796][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:38.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.804][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:38.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:38.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:38.892][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-08-10 16:01:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:38.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:38.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:38.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:38.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.199][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.223][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.341][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.347][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.361][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.372][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.385][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.391][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.415][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-08-10 16:01:39.446][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:39.447][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:39.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:39.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:39.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:39.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:39.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:39.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:39.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:39.462][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.484][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.491][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.521][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.535][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.542][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:39.543][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:39.592][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-08-10 16:01:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.720][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:39.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.767][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.815][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.866][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.869][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.889][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.913][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.936][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.030][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.036][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.075][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.085][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.086][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.092][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-08-10 16:01:40.093][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:40.094][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:40.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:40.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:40.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:40.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:40.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:40.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:40.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:40.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.112][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.148][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.163][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.170][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:40.171][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:40.219][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-08-10 16:01:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.369][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.443][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.490][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.514][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.537][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:40.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.580][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:40.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.586][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:40.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:40.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:40.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:40.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.627][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:40.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:40.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:40.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:40.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:40.642][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:40.648][biodb::testThat]
biodb.INFO [2024-08-10 16:01:40.649][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:01:40.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:40.651][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:40.653][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-08-10 16:01:40.660][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:01:40.664][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-08-10 16:01:40.665][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, FALSE".
biodb.TRACE[2024-08-10 16:01:40.667][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml".
biodb.DEBUG[2024-08-10 16:01:40.668][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:40.669][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:40.670][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:40.671][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:40.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:40.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:40.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:40.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:40.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:40.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:40.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:40.684][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2024-08-10 16:01:40.702][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:40.703][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:40.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2024-08-10 16:01:41.756][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2024-08-10 16:01:42.393][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:42.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2024-08-10 16:01:42.443][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2024-08-10 16:01:42.447][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2024-08-10 16:01:42.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:42.450][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:01:42.452][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:42.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:42.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:42.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:42.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:42.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:42.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:42.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:42.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.475][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.478][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.483][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.500][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.512][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.515][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.526][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.534][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:42.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:42.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:42.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:42.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:42.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:42.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:42.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:42.583][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.591][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.598][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.631][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.646][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.660][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:42.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:42.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:42.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:42.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:42.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:42.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:42.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:42.703][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.710][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.739][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.740][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.746][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.766][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.799][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.800][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:42.868][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-08-10 16:01:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:01:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:01:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:01:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:42.917][biodb::testThat]
biodb.INFO [2024-08-10 16:01:42.918][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:01:42.919][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:42.920][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:42.922][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.925][ef$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:42.926][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-08-10 16:01:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:42.963][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-08-10 16:01:42.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-08-10 16:01:42.990][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:43.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-08-10 16:01:43.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:43.006][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-08-10 16:01:43.010][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:43.024][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:43.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:43.038][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:01:43.573][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:01:44.105][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:44.108][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-08-10 16:01:44.111][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-08-10 16:01:44.114][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-08-10 16:01:44.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:44.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:44.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.128][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.130][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:44.134][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.135][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:01:44.136][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:44.137][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:44.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:44.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:44.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:44.232][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:44.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:44.234][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:44.235][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-08-10 16:01:44.248][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.249][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:01:44.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:44.251][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:44.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:44.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:01:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:01:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:01:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:44.344][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.345][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:01:44.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:44.351][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.358][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.359][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:01:44.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:44.361][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.369][biodb::testThat]
biodb.INFO [2024-08-10 16:01:44.370][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:01:44.370][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:44.371][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:44.374][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-08-10 16:01:45.523][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-08-10 16:01:47.046][biodb::testThat]
biodb.INFO [2024-08-10 16:01:47.047][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:01:47.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:47.049][biodb::testThat]
biodb.DEBUG[2024-08-10 16:01:47.480][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-08-10 16:01:47.942][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:47.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:47.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.949][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:01:47.951][biodb::testThat]
biodb.INFO [2024-08-10 16:01:47.952][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-08-10 16:01:47.953][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:01:47.954][biodb::testThat]
biodb.TRACE[2024-08-10 16:01:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:48.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.066][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:48.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:48.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:48.070][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:01:48.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:48.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:48.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:48.155][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-08-10 16:01:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:01:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:01:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:48.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:48.200][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:48.203][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:48.204][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:48.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:01:48.594][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:01:48.981][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:48.984][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2024-08-10 16:01:48.987][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2024-08-10 16:01:48.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:48.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:48.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:48.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:48.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:48.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:48.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:49.000][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-08-10 16:01:49.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:49.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-08-10 16:01:49.055][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:49.056][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:49.057][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:49.058][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:49.059][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:49.060][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:49.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:49.082][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-08-10 16:01:49.084][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:49.085][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:49.086][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-08-10 16:01:49.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-08-10 16:01:49.952][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:49.955][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-08-10 16:01:49.958][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-08-10 16:01:49.960][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-08-10 16:01:49.961][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:49.963][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:49.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:49.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:49.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:49.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:49.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:49.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:49.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:49.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:49.976][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:49.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:49.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.993][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:49.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:49.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:50.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:50.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:50.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:50.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.020][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:50.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:50.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:50.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.043][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:50.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:50.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:50.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:50.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:50.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:50.101][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-08-10 16:01:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:50.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:50.125][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:50.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:50.127][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:01:50.515][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:01:50.948][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:50.952][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2024-08-10 16:01:50.960][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2024-08-10 16:01:50.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:50.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:50.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:50.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:50.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:50.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:50.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:51.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:51.023][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-08-10 16:01:51.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:51.026][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-08-10 16:01:51.027][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:51.029][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:51.030][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:51.031][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:51.032][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:51.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:51.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:51.046][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-08-10 16:01:51.049][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:51.050][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:51.052][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-08-10 16:01:51.443][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-08-10 16:01:51.866][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:51.869][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-08-10 16:01:51.893][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-08-10 16:01:51.896][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-08-10 16:01:51.897][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:51.899][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:51.900][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:51.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:51.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:51.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:51.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:51.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:51.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:51.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:51.913][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.922][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:51.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:51.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.930][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:51.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:51.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:51.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:51.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:51.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:51.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.959][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:51.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:51.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:51.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.983][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:51.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:51.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:51.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:51.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:52.038][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-08-10 16:01:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:52.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:01:52.072][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:01:52.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:01:52.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:01:52.076][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:01:52.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:52.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:52.107][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-08-10 16:01:52.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:52.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-08-10 16:01:52.111][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:52.112][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:52.113][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:52.113][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:52.114][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:52.115][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:52.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:52.127][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-08-10 16:01:52.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:52.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:52.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-08-10 16:01:52.521][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-08-10 16:01:52.948][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:52.953][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-08-10 16:01:52.960][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-08-10 16:01:52.966][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-08-10 16:01:52.969][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:52.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:52.974][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:52.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:52.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:52.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:52.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:52.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:52.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:53.000][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.009][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:53.010][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:53.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.013][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:53.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:53.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:53.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:53.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:53.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.029][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:53.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:53.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.036][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:53.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:53.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.044][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:53.045][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.047][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:53.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:53.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:53.100][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-08-10 16:01:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:53.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:53.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:53.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:53.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:53.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:53.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:53.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:53.129][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-08-10 16:01:53.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:53.131][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-08-10 16:01:53.133][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:53.134][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:53.135][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:53.136][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:53.137][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:53.137][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:53.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:53.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:53.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:53.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:53.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:53.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:53.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:53.149][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-08-10 16:01:53.152][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:53.153][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:53.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-08-10 16:01:53.543][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-08-10 16:01:53.984][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:53.988][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-08-10 16:01:53.992][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-08-10 16:01:53.995][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-08-10 16:01:53.996][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:53.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:53.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:54.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:54.016][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.025][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:54.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:54.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.030][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:54.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:54.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:54.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:54.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.043][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.044][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:54.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.047][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:54.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.055][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:54.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.058][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.064][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:54.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:54.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:54.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:54.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:54.157][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-08-10 16:01:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:54.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:54.187][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-08-10 16:01:54.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:54.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-08-10 16:01:54.191][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:54.192][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:54.193][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:54.194][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:54.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:54.196][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:54.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:54.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:54.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:54.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:54.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:54.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:54.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:54.208][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-08-10 16:01:54.211][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:54.212][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:54.213][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-08-10 16:01:54.601][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-08-10 16:01:55.027][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:55.030][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-08-10 16:01:55.033][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-08-10 16:01:55.035][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-08-10 16:01:55.036][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:55.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:55.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:55.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:55.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.059][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:55.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:55.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:55.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:55.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:55.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:55.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:55.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.075][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.076][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:55.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.080][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:55.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.088][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:55.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:55.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.096][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:55.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:55.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:55.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:55.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:55.152][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-08-10 16:01:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:55.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:55.180][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-08-10 16:01:55.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:55.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-08-10 16:01:55.184][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:55.185][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:55.186][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:55.187][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:55.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:55.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:55.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:55.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:55.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:55.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:55.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:55.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:55.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:55.200][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-08-10 16:01:55.203][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:55.204][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:55.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-08-10 16:01:55.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-08-10 16:01:56.020][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:56.022][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-08-10 16:01:56.026][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-08-10 16:01:56.028][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-08-10 16:01:56.030][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:56.031][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:56.032][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:56.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:56.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.053][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:56.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:56.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.061][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:56.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:56.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.069][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:56.070][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:56.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.100][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:56.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.123][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.174][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-08-10 16:01:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:56.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.195][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-08-10 16:01:56.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:56.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-08-10 16:01:56.199][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:56.200][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:56.201][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:56.202][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:56.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:56.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:56.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:56.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:56.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:56.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:56.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:56.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:56.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:56.215][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-08-10 16:01:56.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:56.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:56.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-08-10 16:01:56.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-08-10 16:01:57.045][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:57.049][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-08-10 16:01:57.057][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-08-10 16:01:57.062][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-08-10 16:01:57.065][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:57.068][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:57.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:57.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:57.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:57.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:57.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.141][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:57.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:57.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:57.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:57.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.166][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.167][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.174][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:57.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:57.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:57.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:57.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:57.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:57.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:57.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:57.254][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-08-10 16:01:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:57.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:57.277][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-08-10 16:01:57.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:57.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-08-10 16:01:57.281][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:57.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:57.284][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:57.285][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:57.286][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:57.287][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:57.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:57.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:57.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:57.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:57.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:57.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:57.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:57.303][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-08-10 16:01:57.305][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:57.306][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:57.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-08-10 16:01:57.698][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-08-10 16:01:58.126][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:58.128][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-08-10 16:01:58.132][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-08-10 16:01:58.134][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-08-10 16:01:58.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:58.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:58.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:58.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:58.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.159][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:58.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:58.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:58.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:58.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:58.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:58.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:58.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:58.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.190][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:58.191][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:58.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.194][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:58.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.209][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:58.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:58.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.212][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:58.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:58.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:58.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:58.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:58.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:58.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:58.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:58.268][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-08-10 16:01:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:58.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:58.297][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-08-10 16:01:58.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:58.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-08-10 16:01:58.300][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:58.301][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:58.302][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:58.303][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:58.304][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:58.305][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:58.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:58.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:58.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:58.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:58.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:58.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:58.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:58.317][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-08-10 16:01:58.319][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:58.320][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:58.321][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-08-10 16:01:58.712][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-08-10 16:01:59.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:01:59.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-08-10 16:01:59.146][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-08-10 16:01:59.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-08-10 16:01:59.150][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:01:59.151][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:01:59.152][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:01:59.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:01:59.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.173][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:59.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:59.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:01:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:01:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.181][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:59.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:59.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:01:59.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:01:59.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:59.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:59.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:01:59.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:01:59.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:01:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:59.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:01:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.208][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:59.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:01:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:01:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:59.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:59.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:01:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:01:59.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.231][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:59.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:59.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:01:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:01:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:59.240][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:59.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:01:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:01:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:01:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:01:59.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:01:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:59.291][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-08-10 16:01:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:01:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:01:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:01:59.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:01:59.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:59.312][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-08-10 16:01:59.313][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:01:59.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-08-10 16:01:59.315][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:01:59.316][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:01:59.317][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:01:59.318][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:01:59.319][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:01:59.320][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:01:59.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:01:59.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:01:59.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:01:59.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:01:59.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:01:59.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:01:59.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:01:59.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-08-10 16:01:59.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:01:59.335][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:01:59.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-08-10 16:01:59.725][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-08-10 16:02:00.158][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:00.162][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-08-10 16:02:00.168][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-08-10 16:02:00.172][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-08-10 16:02:00.174][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:00.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:00.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:00.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:00.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:00.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:00.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:00.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:00.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:00.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:00.206][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.215][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:00.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:00.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:00.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:00.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:00.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:00.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:00.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:00.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:00.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:00.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.255][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:00.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:00.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:00.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.272][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:00.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:00.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.280][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:00.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:00.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:00.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:00.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.310][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:00.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:00.355][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-08-10 16:02:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:00.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:00.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:00.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:00.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:00.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:00.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:00.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:00.378][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-08-10 16:02:00.379][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:00.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-08-10 16:02:00.382][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:00.383][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:00.384][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:00.385][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:00.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:00.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:00.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:00.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:00.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:00.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:00.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:00.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:00.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:00.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-08-10 16:02:00.402][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:00.403][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:00.404][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-08-10 16:02:00.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-08-10 16:02:01.218][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:01.220][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-08-10 16:02:01.224][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-08-10 16:02:01.226][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-08-10 16:02:01.228][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:01.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:01.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:01.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:01.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:01.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:01.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:01.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:01.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:01.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:01.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.251][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:01.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:01.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:01.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.259][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:01.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:01.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:01.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:01.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:01.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:01.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:01.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:01.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.286][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:01.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:01.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:01.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:01.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:01.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:01.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:01.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:01.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:01.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:01.367][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-08-10 16:02:01.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:01.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:01.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:01.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:01.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:01.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:01.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:01.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:01.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:01.389][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-08-10 16:02:01.389][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:01.391][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-08-10 16:02:01.392][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:01.393][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:01.394][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:01.395][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:01.396][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:01.397][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:01.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:01.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:01.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:01.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:01.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:01.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:01.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:01.409][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-08-10 16:02:01.411][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:01.412][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:01.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-08-10 16:02:01.801][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-08-10 16:02:02.226][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:02.228][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-08-10 16:02:02.231][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-08-10 16:02:02.234][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-08-10 16:02:02.235][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:02.236][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:02.237][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:02.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:02.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:02.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:02.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:02.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:02.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:02.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:02.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.258][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:02.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:02.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.274][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:02.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:02.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:02.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:02.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:02.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:02.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:02.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:02.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.301][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:02.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:02.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:02.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:02.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:02.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:02.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:02.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:02.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:02.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:02.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:02.377][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-08-10 16:02:02.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:02.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:02.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:02.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:02.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:02.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:02.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:02.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:02.398][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-08-10 16:02:02.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:02.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-08-10 16:02:02.401][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:02.402][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:02.403][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:02.404][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:02.405][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:02.406][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:02.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:02.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:02.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:02.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:02.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:02.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:02.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:02.418][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-08-10 16:02:02.420][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:02.421][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:02.422][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-08-10 16:02:04.322][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-08-10 16:02:04.753][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:04.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-08-10 16:02:04.760][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-08-10 16:02:04.785][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-08-10 16:02:04.787][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:04.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:04.790][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:04.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:04.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:04.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:04.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:04.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:04.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:04.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:04.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.812][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:04.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.821][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:04.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:04.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.829][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:04.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:04.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:04.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:04.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:04.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:04.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.841][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:04.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:04.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:04.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:04.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.857][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:04.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:04.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:04.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:04.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.865][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:04.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:04.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:04.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:04.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:04.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:04.917][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-08-10 16:02:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:04.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:04.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:04.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:04.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:04.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:04.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:04.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:04.939][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-08-10 16:02:04.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:04.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-08-10 16:02:04.943][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:04.944][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:04.945][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:04.946][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:04.947][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:04.948][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:04.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:04.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:04.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:04.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:04.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:04.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:04.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:04.965][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-08-10 16:02:04.967][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:04.968][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:04.969][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-08-10 16:02:05.359][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-08-10 16:02:05.790][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:05.795][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-08-10 16:02:05.802][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-08-10 16:02:05.807][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-08-10 16:02:05.810][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:05.813][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:05.815][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:05.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:05.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:05.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:05.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:05.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:05.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:05.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:05.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.845][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:05.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:05.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.853][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:05.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:05.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:05.862][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:05.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:05.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:05.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:05.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:05.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.873][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:05.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:05.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:05.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:05.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:05.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:05.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.895][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:05.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:05.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:05.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:05.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:05.942][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-08-10 16:02:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:05.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:05.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:05.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:05.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:05.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:05.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:05.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:05.971][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-08-10 16:02:05.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:05.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-08-10 16:02:05.975][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:05.976][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:05.977][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:05.978][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:05.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:05.979][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:05.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:05.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:05.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:05.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:05.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:05.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:05.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:05.991][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-08-10 16:02:05.993][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:05.994][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:05.996][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-08-10 16:02:06.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-08-10 16:02:07.030][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:07.033][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-08-10 16:02:07.036][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-08-10 16:02:07.038][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-08-10 16:02:07.039][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:07.041][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:07.042][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:07.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:07.054][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.062][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:07.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:07.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:07.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:07.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:07.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:07.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:07.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.097][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:07.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.101][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:07.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.113][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:07.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:07.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:07.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:07.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:07.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:07.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:07.180][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-08-10 16:02:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:07.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:07.201][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-08-10 16:02:07.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:07.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-08-10 16:02:07.205][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:07.206][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:07.207][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:07.208][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:07.209][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:07.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:07.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:07.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:07.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:07.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:07.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:07.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:07.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:07.221][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-08-10 16:02:07.224][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:07.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:07.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-08-10 16:02:07.627][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-08-10 16:02:08.029][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:08.033][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-08-10 16:02:08.037][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-08-10 16:02:08.039][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-08-10 16:02:08.041][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:08.042][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:08.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:08.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:08.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.069][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:08.070][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:08.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.078][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:08.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:08.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:08.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:08.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.090][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.098][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.104][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:08.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:08.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.108][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:08.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:08.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:08.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:08.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:08.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:08.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:08.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:08.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:08.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:08.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:08.206][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-08-10 16:02:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:08.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:08.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:08.228][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-08-10 16:02:08.229][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:08.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-08-10 16:02:08.232][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:08.233][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:08.234][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:08.235][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:08.236][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:08.237][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:08.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:08.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:08.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:08.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:08.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:08.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:08.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:08.248][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-08-10 16:02:08.251][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:08.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:08.253][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-08-10 16:02:08.648][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-08-10 16:02:09.075][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:09.077][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-08-10 16:02:09.080][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-08-10 16:02:09.083][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-08-10 16:02:09.084][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:09.085][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:09.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:09.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:09.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.107][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:09.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:09.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:09.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:09.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:09.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:09.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:09.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:09.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:09.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.134][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:09.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:09.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.142][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:09.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.165][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:09.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:09.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.173][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:09.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:09.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:09.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:09.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:09.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:09.224][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-08-10 16:02:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:09.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:09.245][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-08-10 16:02:09.246][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:09.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-08-10 16:02:09.249][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:09.250][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:09.251][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:09.252][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:09.253][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:09.254][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:09.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:09.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:09.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:09.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:09.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:09.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:09.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:09.266][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-08-10 16:02:09.268][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:09.269][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:09.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-08-10 16:02:09.668][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-08-10 16:02:10.101][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:10.103][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-08-10 16:02:10.107][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-08-10 16:02:10.109][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-08-10 16:02:10.110][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:10.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:10.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:10.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:10.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:10.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:10.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:10.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:10.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:10.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:10.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:10.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:10.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.176][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:10.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:10.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:10.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.199][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:10.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:10.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:10.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:10.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:10.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:10.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:10.250][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-08-10 16:02:10.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:10.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:10.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:10.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:10.272][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-08-10 16:02:10.273][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:10.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-08-10 16:02:10.275][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:10.276][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:10.277][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:10.278][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:10.279][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:10.280][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:10.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:10.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:10.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:10.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:10.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:10.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:10.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:10.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-08-10 16:02:10.294][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:10.295][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:10.296][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-08-10 16:02:10.701][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-08-10 16:02:11.129][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:11.154][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-08-10 16:02:11.159][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-08-10 16:02:11.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-08-10 16:02:11.163][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:11.164][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:11.165][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:11.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:11.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.188][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:11.189][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:11.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:11.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:11.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:11.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:11.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:11.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:11.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:11.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:11.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:11.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:11.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:11.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:11.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.224][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:11.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.228][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:11.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.240][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:11.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:11.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:11.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:11.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:11.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:11.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:11.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:11.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:11.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:11.304][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-08-10 16:02:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:11.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:11.331][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-08-10 16:02:11.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:11.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-08-10 16:02:11.334][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:11.335][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:11.336][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:11.337][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:11.338][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:11.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:11.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:11.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:11.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:11.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:11.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:11.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:11.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:11.379][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-08-10 16:02:11.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:11.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:11.384][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-08-10 16:02:11.778][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-08-10 16:02:12.206][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:12.208][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-08-10 16:02:12.211][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-08-10 16:02:12.214][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-08-10 16:02:12.215][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:12.216][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:12.217][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:12.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:12.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.238][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:12.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:12.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:12.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:12.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.246][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:12.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:12.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:12.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:12.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:12.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:12.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.273][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:12.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.277][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:12.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:12.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.296][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:12.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:12.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:12.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.306][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:12.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.355][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-08-10 16:02:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:12.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:12.376][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-08-10 16:02:12.377][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:12.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-08-10 16:02:12.380][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:12.381][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:12.382][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:12.383][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:12.384][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:12.385][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:12.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:12.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:12.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:12.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:12.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:12.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:12.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:12.396][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-08-10 16:02:12.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:12.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:12.401][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-08-10 16:02:12.793][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-08-10 16:02:13.219][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:13.221][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-08-10 16:02:13.224][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-08-10 16:02:13.227][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-08-10 16:02:13.228][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:13.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:13.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:13.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.251][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:13.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:13.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.259][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:13.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:13.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:13.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:13.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:13.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:13.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:13.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:13.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.286][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:13.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.301][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:13.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:13.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:13.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:13.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:13.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:13.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.368][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-08-10 16:02:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:13.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:13.411][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:13.412][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:13.413][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:13.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:13.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:13.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:13.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:13.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:13.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:13.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:13.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:13.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:13.931][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:13.932][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:13.933][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:14.323][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:14.748][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:14.750][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-08-10 16:02:14.754][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-08-10 16:02:14.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:14.760][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:14.761][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:14.763][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:15.172][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:15.600][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:15.602][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-08-10 16:02:15.605][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-08-10 16:02:15.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:15.618][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-08-10 16:02:15.619][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:15.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-08-10 16:02:15.621][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:15.622][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:15.623][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:15.624][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:15.625][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:15.626][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:15.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:15.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:15.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:15.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:15.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:15.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:15.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:15.649][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-08-10 16:02:15.651][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:15.652][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:15.653][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-08-10 16:02:16.064][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-08-10 16:02:19.485][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:19.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-08-10 16:02:19.493][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-08-10 16:02:19.497][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-08-10 16:02:19.499][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:19.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:19.502][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:19.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:19.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:19.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:19.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:19.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:19.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:19.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:19.519][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.529][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:19.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:19.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:19.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:19.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:19.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:19.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:19.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:19.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:19.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.572][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:19.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:19.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:19.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:19.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.597][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:19.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:19.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:19.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:19.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:19.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:19.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:19.654][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-08-10 16:02:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:19.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:19.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:19.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:19.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:19.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:19.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:19.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:19.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:19.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:19.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:19.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:19.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:19.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:19.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:19.712][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-08-10 16:02:19.712][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:19.714][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-08-10 16:02:19.715][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:19.716][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:19.717][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:19.718][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:19.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:19.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:19.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:19.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:19.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:19.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:19.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:19.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:19.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:19.731][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-08-10 16:02:19.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:19.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:19.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-08-10 16:02:20.349][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-08-10 16:02:20.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:20.778][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-08-10 16:02:20.782][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-08-10 16:02:20.784][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-08-10 16:02:20.785][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:20.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:20.788][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:20.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:20.800][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:20.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:20.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:20.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:20.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:20.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:20.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:20.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:20.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:20.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:20.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:20.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:20.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.844][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:20.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:20.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:20.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.859][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:20.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:20.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:20.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:20.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.869][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:20.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:20.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:20.926][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-08-10 16:02:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:20.953][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:20.956][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:20.957][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:20.959][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:20.960][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:20.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:20.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:20.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:20.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:20.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:20.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:20.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:20.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:20.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:20.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.464][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:21.467][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:21.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-08-10 16:02:21.469][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:21.471][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-08-10 16:02:21.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:21.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:21.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:21.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:21.930][biodb::testThat]
biodb.INFO [2024-08-10 16:02:21.931][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-08-10 16:02:21.932][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:21.933][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:21.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:21.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:21.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:21.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:21.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:21.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:22.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:22.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:22.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:02:22.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:22.011][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:02:22.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:22.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:22.041][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:22.042][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:02:22.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:22.045][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:02:22.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:22.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:22.087][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:22.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.106][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.117][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:02:22.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.161][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:22.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.213][private$selectFields]
biodb.TRACE[2024-08-10 16:02:22.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:22.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:22.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:22.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.229][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:22.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:02:22.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:22.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:22.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:22.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:22.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:22.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:22.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:22.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:22.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:22.257][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:22.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:22.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:22.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:22.668][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:23.083][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:23.086][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-08-10 16:02:23.090][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-08-10 16:02:23.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:23.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:23.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:23.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:23.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:23.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:23.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:23.106][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-08-10 16:02:23.107][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:23.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-08-10 16:02:23.110][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:23.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:23.112][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:23.114][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:23.115][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:23.116][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:23.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:23.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:23.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:23.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:23.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:23.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:23.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:23.130][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-08-10 16:02:23.133][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:23.134][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:23.135][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-08-10 16:02:23.522][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-08-10 16:02:23.944][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:23.946][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-08-10 16:02:23.950][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-08-10 16:02:23.952][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-08-10 16:02:23.954][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:23.955][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:23.956][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:23.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:23.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:23.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:23.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:23.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:23.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:23.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:23.970][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:23.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:23.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:23.973][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:23.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:23.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:23.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:23.979][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:23.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:23.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:23.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:23.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:23.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:23.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:23.988][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:23.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:23.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:23.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:24.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:24.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:24.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:24.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.038][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:24.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:24.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.054][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:24.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:24.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:24.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:24.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:24.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:24.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:24.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:24.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:24.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:24.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:24.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:24.115][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-08-10 16:02:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:24.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:24.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:24.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:24.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:24.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:24.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:24.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:24.137][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-08-10 16:02:24.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:24.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-08-10 16:02:24.140][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:24.141][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:24.142][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:24.143][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:24.144][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:24.145][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:24.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:24.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:24.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:24.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:24.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:24.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:24.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:24.157][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-08-10 16:02:24.159][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:24.160][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:24.162][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-08-10 16:02:24.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-08-10 16:02:25.187][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:25.192][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-08-10 16:02:25.199][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-08-10 16:02:25.205][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-08-10 16:02:25.208][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:25.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:25.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:25.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:25.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:25.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:25.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:25.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:25.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:25.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:25.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.242][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:25.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:25.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:25.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:25.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:25.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:25.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:25.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:25.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.277][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:25.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:25.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.292][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:25.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:25.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:25.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:25.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:25.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:25.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:25.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:25.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:25.351][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-08-10 16:02:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:25.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:25.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:25.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:25.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:25.759][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:26.164][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:26.192][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-08-10 16:02:26.198][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-08-10 16:02:26.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:26.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:26.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:26.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:26.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:26.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:26.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:26.213][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-08-10 16:02:26.214][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:26.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-08-10 16:02:26.217][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:26.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:26.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:26.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:26.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:26.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:26.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:26.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:26.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:26.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:26.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:26.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:26.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:26.235][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-08-10 16:02:26.237][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:26.238][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:26.240][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-08-10 16:02:26.628][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-08-10 16:02:27.137][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:27.140][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-08-10 16:02:27.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-08-10 16:02:27.145][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-08-10 16:02:27.147][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:27.148][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:27.149][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:27.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:27.163][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.172][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.180][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.207][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.214][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:27.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:27.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.239][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:27.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:27.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:27.301][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-08-10 16:02:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:27.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:27.322][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-08-10 16:02:27.323][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:27.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-08-10 16:02:27.326][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:27.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:27.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:27.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:27.330][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:27.331][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:27.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:27.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:27.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:27.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:27.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:27.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:27.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:27.343][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-08-10 16:02:27.345][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:27.346][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:27.347][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-08-10 16:02:27.934][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-08-10 16:02:28.365][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:28.370][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-08-10 16:02:28.377][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-08-10 16:02:28.382][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-08-10 16:02:28.385][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:28.388][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:28.391][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:28.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:28.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.422][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.430][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:28.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:28.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.434][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:28.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:28.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.440][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:28.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:28.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:28.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:28.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.460][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.474][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:28.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.501][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:28.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:28.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:28.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:28.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:28.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:28.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:28.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.560][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-08-10 16:02:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:28.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.582][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-08-10 16:02:28.583][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:28.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-08-10 16:02:28.585][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:28.586][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:28.587][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:28.588][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:28.589][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:28.590][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:28.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:28.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:28.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:28.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:28.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:28.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:28.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:28.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-08-10 16:02:28.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:28.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:28.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-08-10 16:02:28.994][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-08-10 16:02:29.629][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:29.631][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-08-10 16:02:29.634][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-08-10 16:02:29.637][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-08-10 16:02:29.638][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:29.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:29.640][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:29.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:29.652][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.653][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.660][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:29.661][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:29.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:29.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.677][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:29.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:29.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:29.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:29.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:29.710][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:29.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.713][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:29.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.723][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:29.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:29.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.733][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.739][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:29.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:29.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:29.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:29.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:29.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:29.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:29.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:29.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:29.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:29.796][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-08-10 16:02:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:29.836][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:29.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.891][private$selectFields]
biodb.TRACE[2024-08-10 16:02:29.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:29.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:29.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:29.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:29.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.936][private$selectFields]
biodb.TRACE[2024-08-10 16:02:29.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:29.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:29.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.942][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.948][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:29.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:29.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:29.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:29.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:29.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:29.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:29.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.982][private$selectFields]
biodb.TRACE[2024-08-10 16:02:29.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:29.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:29.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.993][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:29.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:29.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:29.997][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:29.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:30.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:30.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:30.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:30.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:30.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:30.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:30.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:30.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:30.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:30.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:30.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:30.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:30.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:30.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:30.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:30.966][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:30.968][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-08-10 16:02:30.971][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-08-10 16:02:30.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:30.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:30.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:30.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:30.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:30.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:30.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:30.984][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-08-10 16:02:30.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:30.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-08-10 16:02:30.987][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:30.988][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:30.990][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:30.990][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:30.991][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:30.992][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:30.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:30.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:30.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:31.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-08-10 16:02:31.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:31.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:31.009][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-08-10 16:02:31.399][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-08-10 16:02:31.830][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:31.832][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-08-10 16:02:31.835][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-08-10 16:02:31.838][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-08-10 16:02:31.839][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:31.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:31.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:31.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:31.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:31.854][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.862][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:31.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:31.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.870][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:31.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:31.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:31.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:31.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:31.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:31.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:31.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:31.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:31.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.897][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:31.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:31.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:31.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.913][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:31.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.930][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:31.931][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:31.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:31.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:31.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:31.980][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-08-10 16:02:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:31.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:31.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:31.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:31.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:31.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:31.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:32.001][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-08-10 16:02:32.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:32.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-08-10 16:02:32.004][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:32.009][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:32.011][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:32.012][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:32.013][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:32.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:32.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:32.029][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-08-10 16:02:32.032][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:32.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:32.035][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-08-10 16:02:32.427][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-08-10 16:02:32.854][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:32.857][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-08-10 16:02:32.860][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-08-10 16:02:32.863][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-08-10 16:02:32.864][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:32.866][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:32.867][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:32.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:32.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:32.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:32.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:32.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:32.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:32.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:32.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.891][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:32.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:32.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:32.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:32.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:32.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:32.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:32.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:32.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.942][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.958][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:32.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:32.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.020][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-08-10 16:02:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:33.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:33.040][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-08-10 16:02:33.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:33.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-08-10 16:02:33.044][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:33.045][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:33.046][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:33.047][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:33.048][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:33.049][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:33.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:33.060][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-08-10 16:02:33.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:33.063][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:33.065][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-08-10 16:02:33.457][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-08-10 16:02:33.855][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:33.858][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-08-10 16:02:33.861][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-08-10 16:02:33.863][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-08-10 16:02:33.864][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:33.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:33.867][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:33.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:33.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:33.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:33.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:33.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:33.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:33.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:33.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.894][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:33.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:33.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:33.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:33.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:33.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:33.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:33.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:33.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.928][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:33.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.938][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:33.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:33.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:33.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:33.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:33.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:33.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:34.000][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-08-10 16:02:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:34.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.021][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-08-10 16:02:34.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:34.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-08-10 16:02:34.025][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:34.026][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:34.027][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:34.028][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:34.029][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:34.030][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:34.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:34.041][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-08-10 16:02:34.044][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:34.048][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:34.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-08-10 16:02:34.438][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-08-10 16:02:34.868][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:34.872][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-08-10 16:02:34.879][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-08-10 16:02:34.885][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-08-10 16:02:34.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:34.890][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:34.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:34.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:34.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:34.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:34.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:34.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:34.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:34.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:34.919][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.931][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:34.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:34.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:34.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:34.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:34.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:34.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:34.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:34.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.971][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:34.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.992][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:34.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:34.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:34.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.002][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:35.003][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:35.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.005][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:35.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:35.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:35.061][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-08-10 16:02:35.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:35.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:35.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:35.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:35.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:35.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:35.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:35.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:35.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:35.103][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-08-10 16:02:35.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:35.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-08-10 16:02:35.107][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:35.108][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:35.109][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:35.110][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:35.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:35.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:35.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:35.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:35.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:35.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:35.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:35.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:35.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:35.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-08-10 16:02:35.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:35.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:35.130][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-08-10 16:02:35.518][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-08-10 16:02:35.951][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:35.954][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-08-10 16:02:35.957][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-08-10 16:02:35.960][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-08-10 16:02:35.961][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:35.963][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:35.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:35.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:35.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:35.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:35.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:35.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:35.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:35.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:35.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.987][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:35.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:35.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.990][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:35.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:35.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:35.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:35.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:36.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:36.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:36.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:36.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.023][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:36.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:36.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:36.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:36.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:36.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:36.046][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:36.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:36.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:36.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:36.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:36.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:36.104][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-08-10 16:02:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:36.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:36.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.125][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-08-10 16:02:36.126][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:36.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-08-10 16:02:36.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:36.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:36.130][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:36.131][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:36.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:36.133][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:36.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:36.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.144][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-08-10 16:02:36.147][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:36.148][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:36.149][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-08-10 16:02:36.545][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-08-10 16:02:36.986][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:36.992][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-08-10 16:02:36.999][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-08-10 16:02:37.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-08-10 16:02:37.007][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:37.010][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:37.012][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:37.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:37.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.050][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:37.051][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:37.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:37.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:37.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:37.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:37.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:37.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:37.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:37.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:37.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.090][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:37.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:37.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:37.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:37.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.113][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:37.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:37.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:37.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.171][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-08-10 16:02:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:37.192][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-08-10 16:02:37.193][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:37.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-08-10 16:02:37.196][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:37.197][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:37.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:37.199][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:37.199][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:37.200][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:37.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:37.212][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-08-10 16:02:37.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:37.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:37.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-08-10 16:02:37.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-08-10 16:02:38.005][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:38.009][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-08-10 16:02:38.013][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-08-10 16:02:38.016][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-08-10 16:02:38.017][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:38.019][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:38.020][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:38.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:38.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.047][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:38.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:38.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.056][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:38.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:38.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:38.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:38.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:38.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:38.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.102][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:38.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.118][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:38.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:38.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:38.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:38.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:38.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:38.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:38.181][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-08-10 16:02:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:38.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:38.203][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-08-10 16:02:38.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:38.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-08-10 16:02:38.206][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:38.207][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:38.208][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:38.209][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:38.210][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:38.211][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:38.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:38.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:38.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:38.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:38.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:38.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:38.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:38.223][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-08-10 16:02:38.225][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:38.226][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:38.227][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-08-10 16:02:38.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-08-10 16:02:39.006][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:39.009][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-08-10 16:02:39.012][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-08-10 16:02:39.015][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-08-10 16:02:39.016][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:39.017][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:39.018][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:39.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:39.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:39.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:39.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:39.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:39.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:39.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:39.032][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.040][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:39.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.057][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:39.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:39.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:39.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:39.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:39.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:39.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:39.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.075][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:39.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.084][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:39.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:39.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:39.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:39.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:39.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:39.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:39.156][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-08-10 16:02:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:39.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:39.172][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:39.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:39.174][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:39.562][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:39.994][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:39.997][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-08-10 16:02:40.000][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-08-10 16:02:40.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:40.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.041][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-08-10 16:02:40.042][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:40.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-08-10 16:02:40.044][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:40.045][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:40.046][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:40.047][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:40.048][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:40.049][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:40.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.060][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-08-10 16:02:40.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:40.063][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:40.064][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-08-10 16:02:40.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-08-10 16:02:40.838][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:40.840][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-08-10 16:02:40.844][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-08-10 16:02:40.846][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-08-10 16:02:40.847][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:40.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:40.850][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:40.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:40.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.870][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:40.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:40.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.878][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:40.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:40.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:40.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:40.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.904][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:40.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:40.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.922][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:40.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:40.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:40.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:40.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.003][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-08-10 16:02:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:41.027][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-08-10 16:02:41.028][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:41.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-08-10 16:02:41.031][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:41.032][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:41.033][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:41.034][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:41.035][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:41.036][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:41.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:41.048][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-08-10 16:02:41.051][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:41.052][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:41.053][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-08-10 16:02:41.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-08-10 16:02:41.834][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:41.836][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-08-10 16:02:41.840][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-08-10 16:02:41.842][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-08-10 16:02:41.844][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:41.845][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:41.846][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:41.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:41.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.868][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:41.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.876][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:41.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:41.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:41.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:41.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.905][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:41.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.929][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:41.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:41.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:41.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:41.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:41.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.987][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-08-10 16:02:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:42.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.017][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.028][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:02:42.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.063][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.074][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:02:42.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.113][private$selectFields]
biodb.TRACE[2024-08-10 16:02:42.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:42.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:42.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:42.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.128][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:02:42.141][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:42.142][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:42.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:42.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:42.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:42.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:42.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:42.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:42.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:42.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:42.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:42.258][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:42.259][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:42.260][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:42.648][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:43.033][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:43.036][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2024-08-10 16:02:43.039][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2024-08-10 16:02:43.043][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:43.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:43.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:43.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:43.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:44.068][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:44.070][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2024-08-10 16:02:44.073][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2024-08-10 16:02:44.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:44.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.157][private$selectFields]
biodb.TRACE[2024-08-10 16:02:44.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:44.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:44.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:02:44.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.266][private$selectFields]
biodb.TRACE[2024-08-10 16:02:44.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:44.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:44.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.292][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:44.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.325][private$selectFields]
biodb.TRACE[2024-08-10 16:02:44.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:44.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:44.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.338][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:44.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.341][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.342][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:44.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:02:44.356][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:44.357][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:44.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:44.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:44.376][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:44.376][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:44.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:44.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:45.182][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:45.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-08-10 16:02:45.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-08-10 16:02:45.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:45.221][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-08-10 16:02:45.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:45.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-08-10 16:02:45.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:45.226][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:45.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:45.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:45.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:45.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:45.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:45.241][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-08-10 16:02:45.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:45.245][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:45.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-08-10 16:02:45.633][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-08-10 16:02:46.059][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:46.061][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-08-10 16:02:46.064][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-08-10 16:02:46.067][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-08-10 16:02:46.068][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:46.069][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:46.070][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:46.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:46.083][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.091][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:46.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.100][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:46.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:46.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:46.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.127][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:46.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.152][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:46.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:46.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.159][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:46.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:46.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:46.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:46.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:46.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:46.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.209][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-08-10 16:02:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:46.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:46.230][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-08-10 16:02:46.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:46.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-08-10 16:02:46.233][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:46.234][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:46.235][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:46.236][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:46.237][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:46.238][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:46.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:46.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:46.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:46.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:46.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:46.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:46.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:46.249][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-08-10 16:02:46.252][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:46.253][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:46.254][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-08-10 16:02:46.644][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-08-10 16:02:47.071][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:47.075][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-08-10 16:02:47.081][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-08-10 16:02:47.085][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-08-10 16:02:47.087][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:47.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:47.091][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:47.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.114][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.126][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:47.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:47.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:47.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:47.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:47.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:47.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:47.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:47.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.190][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:47.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:47.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:47.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:47.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:47.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:47.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:47.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:47.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:47.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:47.269][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-08-10 16:02:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:47.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:47.282][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:47.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.304][private$selectFields]
biodb.TRACE[2024-08-10 16:02:47.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:47.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:47.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.316][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:47.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:47.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.355][private$selectFields]
biodb.TRACE[2024-08-10 16:02:47.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:47.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:47.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:02:47.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.400][private$selectFields]
biodb.TRACE[2024-08-10 16:02:47.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:47.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:47.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:47.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.416][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:47.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:02:47.429][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:47.430][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:47.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:47.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:47.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:47.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:47.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:47.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:47.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:47.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:47.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:47.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:47.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:47.839][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:48.224][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:48.227][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-08-10 16:02:48.230][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-08-10 16:02:48.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.243][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-08-10 16:02:48.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:48.245][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-08-10 16:02:48.247][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:48.248][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:48.249][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:48.250][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:48.251][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:48.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:48.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.272][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-08-10 16:02:48.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:48.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:48.277][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-08-10 16:02:48.687][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-08-10 16:02:49.073][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:49.076][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-08-10 16:02:49.080][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-08-10 16:02:49.083][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-08-10 16:02:49.084][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:49.085][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:49.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:49.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:49.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.107][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:49.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:49.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:49.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:49.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:49.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:49.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.145][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:49.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:49.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:49.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.153][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:49.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:49.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.167][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:49.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:49.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:49.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:49.228][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-08-10 16:02:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:49.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:49.250][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-08-10 16:02:49.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:49.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-08-10 16:02:49.253][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:49.254][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:49.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:49.256][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:49.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:49.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:49.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:49.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:49.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:49.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:49.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:49.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:49.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:49.269][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-08-10 16:02:49.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:49.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:49.274][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-08-10 16:02:49.667][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-08-10 16:02:50.099][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:50.101][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-08-10 16:02:50.105][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-08-10 16:02:50.107][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-08-10 16:02:50.108][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:50.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:50.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:50.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:50.123][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.131][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:50.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:50.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:50.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:50.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:50.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:50.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:50.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.173][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:50.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:50.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:50.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:50.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.199][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:50.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:50.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:50.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:50.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:50.274][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-08-10 16:02:50.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:50.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:50.297][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-08-10 16:02:50.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:50.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-08-10 16:02:50.300][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:50.301][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:50.302][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:50.303][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:50.304][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:50.305][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:50.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:50.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:50.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:50.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:50.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:50.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:50.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:50.318][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-08-10 16:02:50.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:50.321][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:50.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-08-10 16:02:50.710][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-08-10 16:02:51.102][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:51.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-08-10 16:02:51.107][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-08-10 16:02:51.110][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-08-10 16:02:51.111][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:51.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:51.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:51.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.126][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.134][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:51.135][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:51.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:51.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:51.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:51.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:51.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:51.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.169][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:51.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.199][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:51.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:51.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:51.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:51.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.249][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-08-10 16:02:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.260][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:51.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.279][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:02:51.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.324][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:02:51.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.386][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.413][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:02:51.414][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:51.415][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:02:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:51.435][biodb::testThat]
biodb.INFO [2024-08-10 16:02:51.436][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-08-10 16:02:51.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:51.438][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:02:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:51.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:51.514][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:51.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:02:51.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:51.518][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:02:51.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:51.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:51.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:02:51.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:51.546][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:02:51.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.587][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:51.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.605][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.617][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:02:51.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.651][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.667][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.670][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:51.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.701][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.712][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.717][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.729][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:02:51.730][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:51.731][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:51.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:51.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:51.746][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:51.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:02:51.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:51.749][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:02:51.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:51.794][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:51.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:02:51.796][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:51.797][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:02:51.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.885][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:51.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.905][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:02:51.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.954][private$selectFields]
biodb.TRACE[2024-08-10 16:02:51.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:51.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:51.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.966][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:51.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:51.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:52.007][private$selectFields]
biodb.TRACE[2024-08-10 16:02:52.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:52.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:52.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:52.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:52.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:52.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:52.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:52.037][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:52.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:52.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:52.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:52.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:02:52.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:52.055][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:02:52.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:52.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:52.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:52.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:52.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:52.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:52.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:52.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:52.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:52.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:52.119][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:52.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:52.121][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:52.516][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:53.065][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:53.067][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-08-10 16:02:53.071][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-08-10 16:02:53.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:53.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:53.113][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-08-10 16:02:53.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:53.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-08-10 16:02:53.116][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:53.117][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:53.118][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:53.119][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:53.120][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:53.121][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:53.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:53.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-08-10 16:02:53.134][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:53.135][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:53.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-08-10 16:02:53.523][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-08-10 16:02:53.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:53.913][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-08-10 16:02:53.916][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-08-10 16:02:53.918][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-08-10 16:02:53.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:53.920][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:53.921][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:53.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:53.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:53.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:53.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:53.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:53.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:53.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:53.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.936][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:53.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.940][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:53.941][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:53.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.948][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:53.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:53.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:53.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:53.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.977][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:53.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.992][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:53.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:53.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:54.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:54.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.002][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:54.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:54.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:54.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.058][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-08-10 16:02:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:54.079][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-08-10 16:02:54.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:54.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-08-10 16:02:54.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:54.083][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:54.084][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:54.085][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:54.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:54.087][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:54.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:54.098][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-08-10 16:02:54.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:54.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:54.103][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-08-10 16:02:54.490][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-08-10 16:02:54.876][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:54.878][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-08-10 16:02:54.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-08-10 16:02:54.883][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-08-10 16:02:54.885][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:54.886][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:54.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:54.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:54.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:54.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.916][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:54.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:54.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.939][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:54.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.946][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:54.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.998][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:54.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:55.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:55.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:55.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.053][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-08-10 16:02:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.076][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-08-10 16:02:55.077][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:55.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-08-10 16:02:55.080][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:55.081][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:55.082][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:55.083][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:55.084][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:55.085][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:55.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.097][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-08-10 16:02:55.100][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:55.101][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:55.102][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-08-10 16:02:55.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-08-10 16:02:55.884][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:55.886][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-08-10 16:02:55.889][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-08-10 16:02:55.891][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-08-10 16:02:55.893][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:55.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:55.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:55.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.916][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:55.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:55.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.924][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:55.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:55.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:55.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:55.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:55.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:55.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:55.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:55.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:55.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:55.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.961][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:55.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:55.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:55.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:55.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:55.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.983][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:55.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:55.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:55.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:55.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.033][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-08-10 16:02:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:56.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.045][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:56.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.064][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.080][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:02:56.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.114][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.130][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-08-10 16:02:56.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.159][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-08-10 16:02:56.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:56.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:02:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:56.256][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.259][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:56.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:02:56.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:56.262][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:02:56.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.268][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:56.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:02:56.270][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:56.271][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:02:56.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:56.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:56.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.350][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.362][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.366][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:02:56.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.400][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.416][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:02:56.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.446][private$selectFields]
biodb.TRACE[2024-08-10 16:02:56.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:56.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:56.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.452][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:56.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.461][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:56.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:56.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:02:56.474][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:56.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:56.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:56.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:56.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:56.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:56.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:56.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:56.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:56.487][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:56.490][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:56.491][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:56.493][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:02:56.878][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:02:57.268][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:57.270][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-08-10 16:02:57.280][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-08-10 16:02:57.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:57.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:57.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:57.363][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-08-10 16:02:57.364][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:57.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-08-10 16:02:57.366][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:57.367][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:57.368][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:57.369][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:57.370][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:57.371][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:57.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:57.384][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-08-10 16:02:57.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:57.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:57.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-08-10 16:02:57.780][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-08-10 16:02:58.167][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:58.170][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-08-10 16:02:58.173][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-08-10 16:02:58.176][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-08-10 16:02:58.177][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:58.178][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:58.180][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:58.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.202][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.203][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:58.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.210][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.243][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.258][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.325][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-08-10 16:02:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.337][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:02:58.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.355][private$selectFields]
biodb.TRACE[2024-08-10 16:02:58.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:58.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:58.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.367][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:02:58.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.401][private$selectFields]
biodb.TRACE[2024-08-10 16:02:58.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:58.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:58.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:02:58.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.447][private$selectFields]
biodb.TRACE[2024-08-10 16:02:58.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:02:58.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:02:58.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.463][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:02:58.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.467][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:02:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-08-10 16:02:58.480][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:02:58.481][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:02:58.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:58.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:02:58.496][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:58.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:02:58.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:58.499][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:02:58.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:58.569][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-08-10 16:02:58.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:58.571][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-08-10 16:02:58.572][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:58.573][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:58.574][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:58.575][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:58.576][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:58.577][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:58.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:58.588][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-08-10 16:02:58.591][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:58.592][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:58.593][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-08-10 16:02:58.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-08-10 16:02:59.381][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:59.383][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-08-10 16:02:59.386][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-08-10 16:02:59.389][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-08-10 16:02:59.390][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:59.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:59.400][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:02:59.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:59.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.421][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:59.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:59.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:02:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:02:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:59.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:59.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:02:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:02:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:59.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:59.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:02:59.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:02:59.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:02:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:59.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:02:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.455][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:59.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:02:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:02:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.469][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:59.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:59.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:02:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:02:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:59.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:02:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:02:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:02:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.527][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-08-10 16:02:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:02:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.548][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-08-10 16:02:59.553][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:59.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-08-10 16:02:59.556][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:59.557][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:59.558][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:59.559][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:02:59.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:59.561][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:59.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:59.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:59.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:59.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:59.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:59.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:59.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:59.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-08-10 16:02:59.574][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:59.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:59.577][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-08-10 16:02:59.973][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-08-10 16:03:00.366][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:00.369][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-08-10 16:03:00.373][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-08-10 16:03:00.375][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-08-10 16:03:00.377][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:00.378][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:00.379][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:00.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:00.396][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.404][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:00.406][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:00.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.408][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:00.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:00.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:00.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:00.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:00.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:00.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:00.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:00.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.443][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:00.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:00.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:00.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:00.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:00.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.467][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:00.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:00.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:00.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:00.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.478][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:00.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:00.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:00.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:00.538][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-08-10 16:03:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:00.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:00.560][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-08-10 16:03:00.561][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:00.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-08-10 16:03:00.563][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:00.564][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:00.565][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:00.566][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:00.567][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:00.568][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:00.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:00.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:00.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:00.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:00.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:00.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:00.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:00.579][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-08-10 16:03:00.582][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:00.583][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:00.584][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-08-10 16:03:00.973][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-08-10 16:03:01.438][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:01.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-08-10 16:03:01.443][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-08-10 16:03:01.445][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-08-10 16:03:01.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:01.448][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:01.449][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:01.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:01.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:01.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:01.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:01.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:01.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:01.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:01.463][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.471][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:01.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:01.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:01.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:01.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:01.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:01.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:01.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:01.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:01.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.509][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:01.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:01.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.524][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:01.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:01.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:01.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:01.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:01.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:01.596][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-08-10 16:03:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:01.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:01.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:01.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:01.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:01.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:01.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:01.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:01.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:01.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:01.616][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-08-10 16:03:01.617][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:01.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-08-10 16:03:01.620][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:01.621][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:01.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:01.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:01.624][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:01.625][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:01.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:01.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:01.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:01.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:01.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:01.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:01.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:01.636][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-08-10 16:03:01.638][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:01.639][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:01.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-08-10 16:03:02.029][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-08-10 16:03:02.462][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:02.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-08-10 16:03:02.474][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-08-10 16:03:02.479][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-08-10 16:03:02.482][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:02.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:02.488][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:02.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:02.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.526][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:02.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:02.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.537][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:02.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:02.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:02.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:02.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:02.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:02.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.573][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:02.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.588][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:02.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:02.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.595][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:02.596][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:02.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.599][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:02.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:02.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:02.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:02.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:02.646][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-08-10 16:03:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:02.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:02.674][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-08-10 16:03:02.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:02.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-08-10 16:03:02.678][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:02.680][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:02.681][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:02.682][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:02.683][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:02.684][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:02.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:02.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:02.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:02.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:02.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:02.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:02.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:02.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-08-10 16:03:02.702][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:02.703][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:02.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-08-10 16:03:03.104][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-08-10 16:03:03.496][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:03.498][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-08-10 16:03:03.502][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-08-10 16:03:03.504][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-08-10 16:03:03.506][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:03.507][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:03.508][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:03.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:03.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.548][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:03.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:03.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.584][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.599][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:03.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.660][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-08-10 16:03:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:03.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.681][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-08-10 16:03:03.682][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:03.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-08-10 16:03:03.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:03.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:03.687][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:03.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:03.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:03.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:03.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:03.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:03.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:03.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:03.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:03.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:03.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:03.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-08-10 16:03:03.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:03.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:03.711][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-08-10 16:03:04.105][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-08-10 16:03:04.533][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:04.535][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-08-10 16:03:04.539][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-08-10 16:03:04.541][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-08-10 16:03:04.542][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:04.543][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:04.544][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:04.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:04.557][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.565][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:04.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:04.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.573][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:04.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:04.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:04.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:04.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:04.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:04.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:04.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:04.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.599][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:04.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.603][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:04.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:04.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.614][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:04.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:04.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:04.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:04.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:04.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:04.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:04.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:04.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:04.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:04.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:04.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:04.673][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-08-10 16:03:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:04.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:04.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:04.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:04.702][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-08-10 16:03:04.703][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:04.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-08-10 16:03:04.706][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:04.706][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:04.707][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:04.708][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:04.709][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:04.710][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:04.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:04.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:04.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:04.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:04.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:04.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:04.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:04.721][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-08-10 16:03:04.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:04.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:04.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-08-10 16:03:05.111][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-08-10 16:03:05.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:05.534][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-08-10 16:03:05.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-08-10 16:03:05.539][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-08-10 16:03:05.541][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:05.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:05.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:05.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.562][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:05.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:05.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.570][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:05.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:05.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:05.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:05.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:05.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.596][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:05.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:05.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.611][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:05.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:05.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.618][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:05.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:05.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:05.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:05.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:05.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:05.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.690][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-08-10 16:03:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.703][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:05.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.724][private$selectFields]
biodb.TRACE[2024-08-10 16:03:05.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:05.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:05.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.736][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:05.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:03:05.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.773][private$selectFields]
biodb.TRACE[2024-08-10 16:03:05.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:05.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:05.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.785][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.790][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-08-10 16:03:05.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.831][private$selectFields]
biodb.TRACE[2024-08-10 16:03:05.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:05.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:05.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.842][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:05.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-08-10 16:03:05.859][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:05.860][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:05.880][biodb::testThat]
biodb.INFO [2024-08-10 16:03:05.881][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-08-10 16:03:05.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:05.882][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.951][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:05.954][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:05.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:03:05.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:05.957][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:03:05.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:05.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:05.987][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:05.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:03:05.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:05.990][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:03:05.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:05.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:06.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.047][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.058][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.062][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:03:06.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.091][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.102][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:06.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.141][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:03:06.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:06.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:06.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:03:06.186][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.187][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:03:06.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.228][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.231][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:03:06.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.235][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:03:06.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:06.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.318][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.333][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:06.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.366][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.377][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.382][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:06.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.411][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.427][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.432][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:06.444][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:06.445][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:06.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:03:06.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.463][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:03:06.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.624][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.627][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:03:06.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.630][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:03:06.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:06.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.707][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.740][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:06.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.757][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.769][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.773][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:06.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.802][private$selectFields]
biodb.TRACE[2024-08-10 16:03:06.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:06.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:06.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.813][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:06.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:06.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:06.830][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:06.831][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:03:06.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.913][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:03:06.916][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:06.918][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:06.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:03:06.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:06.922][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:03:06.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.991][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:06.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.013][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.030][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.031][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:03:07.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.077][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.094][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:07.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.125][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:03:07.153][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:07.154][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:07.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:07.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:07.169][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:07.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:03:07.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:07.172][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:03:07.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.237][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:07.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.255][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.270][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:07.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.299][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.314][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:03:07.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.348][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.363][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:03:07.376][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:07.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:07.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:07.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:07.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:07.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:03:07.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:07.395][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:03:07.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.455][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:07.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.473][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.484][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:03:07.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.522][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:03:07.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.567][private$selectFields]
biodb.TRACE[2024-08-10 16:03:07.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:07.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:07.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:07.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:03:07.594][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:07.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:07.610][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.629][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:07.630][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.631][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-08-10 16:03:07.632][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.633][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:07.705][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:07.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:07.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:07.710][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:08.103][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:08.653][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:08.655][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-08-10 16:03:08.659][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-08-10 16:03:08.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.674][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-08-10 16:03:08.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:08.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-08-10 16:03:08.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:08.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:08.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:08.680][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:08.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:08.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:08.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:08.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:08.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:08.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:08.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:08.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:08.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:08.694][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-08-10 16:03:08.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:08.698][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:08.699][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-08-10 16:03:09.087][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-08-10 16:03:09.488][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:09.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-08-10 16:03:09.496][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-08-10 16:03:09.499][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-08-10 16:03:09.500][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:09.502][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:09.503][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:09.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:09.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:09.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:09.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:09.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:09.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:09.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:09.520][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.552][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:09.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:09.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:09.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:09.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:09.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:09.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:09.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:09.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.593][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:09.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.597][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:09.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:09.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.609][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:09.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:09.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:09.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:09.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.617][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:09.618][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:09.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:09.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:09.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:09.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:09.671][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-08-10 16:03:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:09.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:09.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:09.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:09.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:09.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:09.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:09.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:09.692][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-08-10 16:03:09.693][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:09.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-08-10 16:03:09.696][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:09.697][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:09.698][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:09.699][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:09.700][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:09.701][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:09.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:09.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:09.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:09.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:09.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:09.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:09.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:09.717][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-08-10 16:03:09.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:09.720][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:09.722][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-08-10 16:03:10.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-08-10 16:03:10.495][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:10.497][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-08-10 16:03:10.500][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-08-10 16:03:10.503][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-08-10 16:03:10.504][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:10.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:10.506][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:10.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:10.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:10.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:10.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:10.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:10.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:10.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:10.519][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.526][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:10.527][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:10.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.534][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:10.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:10.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:10.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:10.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:10.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:10.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:10.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:10.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:10.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.566][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:10.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:10.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:10.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:10.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.581][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:10.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:10.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:10.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.588][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:10.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:10.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:10.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:10.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:10.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:10.652][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-08-10 16:03:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:10.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:10.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:10.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:10.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:10.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:10.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:10.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:10.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:10.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:10.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:10.673][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-08-10 16:03:10.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:10.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-08-10 16:03:10.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:10.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:10.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:10.680][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:10.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:10.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:10.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:10.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:10.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:10.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:10.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:10.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:10.693][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-08-10 16:03:10.696][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:10.696][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:10.698][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-08-10 16:03:11.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-08-10 16:03:11.473][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:11.475][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-08-10 16:03:11.478][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-08-10 16:03:11.480][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-08-10 16:03:11.481][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:11.483][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:11.484][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:11.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:11.496][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.504][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:11.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:11.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:11.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:11.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:11.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:11.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:11.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:11.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:11.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:11.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:11.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.539][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:11.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:11.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:11.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:11.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:11.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:11.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:11.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.562][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:11.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:11.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:11.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:11.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:11.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:11.622][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-08-10 16:03:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:11.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:11.643][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-08-10 16:03:11.644][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:11.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-08-10 16:03:11.647][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:11.648][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:11.649][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:11.650][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:11.650][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:11.651][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:11.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:11.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:11.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:11.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:11.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:11.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:11.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:11.663][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-08-10 16:03:11.665][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:11.666][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:11.667][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-08-10 16:03:12.056][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-08-10 16:03:12.450][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:12.454][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-08-10 16:03:12.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-08-10 16:03:12.461][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-08-10 16:03:12.462][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:12.463][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:12.465][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:12.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.481][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.490][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:12.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.510][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:12.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:12.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.517][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.518][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.526][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.527][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:12.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.548][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.565][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.573][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.574][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:12.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.627][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-08-10 16:03:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:12.640][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:12.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.658][private$selectFields]
biodb.TRACE[2024-08-10 16:03:12.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:12.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:12.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:03:12.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.710][private$selectFields]
biodb.TRACE[2024-08-10 16:03:12.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:12.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:12.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.726][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-08-10 16:03:12.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.756][private$selectFields]
biodb.TRACE[2024-08-10 16:03:12.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:12.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:12.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:12.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:12.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-08-10 16:03:12.784][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:12.785][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:12.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:12.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:12.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:12.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:12.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:12.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:12.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:12.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:12.801][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:12.802][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:12.803][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:13.191][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:13.583][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:13.585][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-08-10 16:03:13.588][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-08-10 16:03:13.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.601][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-08-10 16:03:13.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:13.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-08-10 16:03:13.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:13.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:13.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:13.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:13.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:13.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:13.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:13.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:13.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:13.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:13.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:13.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:13.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:13.622][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-08-10 16:03:13.625][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:13.626][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:13.627][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-08-10 16:03:14.012][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-08-10 16:03:14.398][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:14.400][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-08-10 16:03:14.414][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-08-10 16:03:14.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-08-10 16:03:14.418][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:14.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:14.421][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:14.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:14.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.440][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:14.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:14.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.448][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:14.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:14.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:14.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:14.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:14.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:14.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:14.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.473][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:14.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:14.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:14.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.488][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:14.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:14.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:14.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:14.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:14.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:14.545][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-08-10 16:03:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:14.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:14.571][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-08-10 16:03:14.572][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:14.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-08-10 16:03:14.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:14.575][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:14.576][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:14.577][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:14.578][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:14.579][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:14.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:14.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:14.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:14.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:14.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:14.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:14.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:14.590][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-08-10 16:03:14.592][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:14.593][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:14.594][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-08-10 16:03:14.981][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-08-10 16:03:15.413][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:15.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-08-10 16:03:15.421][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-08-10 16:03:15.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-08-10 16:03:15.426][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:15.427][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:15.428][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:15.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.445][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.454][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:15.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:15.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:15.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:15.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:15.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.492][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:15.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:15.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.508][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.517][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:15.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:15.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:15.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:15.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:15.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.591][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-08-10 16:03:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:15.613][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-08-10 16:03:15.613][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:15.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-08-10 16:03:15.616][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:15.617][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:15.618][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:15.619][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:15.620][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:15.621][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:15.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:15.632][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-08-10 16:03:15.635][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:15.636][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:15.637][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-08-10 16:03:16.024][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-08-10 16:03:16.625][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:16.627][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-08-10 16:03:16.630][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-08-10 16:03:16.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-08-10 16:03:16.635][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:16.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:16.638][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:16.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:16.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.658][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:16.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:16.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:16.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:16.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:16.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:16.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:16.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:16.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:16.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.693][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:16.694][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:16.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:16.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:16.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.725][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:16.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:16.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:16.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:16.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:16.775][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-08-10 16:03:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:16.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:16.796][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-08-10 16:03:16.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:16.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-08-10 16:03:16.799][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:16.800][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:16.801][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:16.802][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:16.803][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:16.804][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:16.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:16.815][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-08-10 16:03:16.818][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:16.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:16.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-08-10 16:03:17.216][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-08-10 16:03:17.628][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:17.630][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-08-10 16:03:17.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-08-10 16:03:17.635][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-08-10 16:03:17.636][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:17.637][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:17.638][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:17.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.658][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:17.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:17.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:17.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:17.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.700][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.701][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:17.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.716][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.723][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:17.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:17.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:17.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:17.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.733][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:17.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:17.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.774][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-08-10 16:03:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:17.795][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-08-10 16:03:17.796][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:17.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-08-10 16:03:17.798][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:17.799][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:17.800][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:17.801][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:17.802][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:17.803][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:17.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:17.815][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-08-10 16:03:17.817][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:17.818][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:17.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-08-10 16:03:18.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-08-10 16:03:18.608][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:18.612][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-08-10 16:03:18.616][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-08-10 16:03:18.619][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-08-10 16:03:18.642][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:18.645][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:18.647][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:18.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.670][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:18.671][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:18.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:18.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.681][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.697][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:18.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:18.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:18.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.709][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:18.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.725][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:18.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:18.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:18.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:18.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.733][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:18.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:18.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:18.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:18.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:18.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.788][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-08-10 16:03:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.814][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-08-10 16:03:18.815][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:18.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-08-10 16:03:18.818][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:18.819][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:18.820][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:18.821][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:18.822][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:18.823][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:18.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.834][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-08-10 16:03:18.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:18.837][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:18.839][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-08-10 16:03:19.227][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-08-10 16:03:19.612][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:19.615][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-08-10 16:03:19.618][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-08-10 16:03:19.620][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-08-10 16:03:19.621][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:19.623][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:19.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:19.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.636][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.644][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:19.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.646][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:19.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.670][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:19.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:19.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.678][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:19.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.681][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.682][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:19.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.693][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:19.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:19.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:19.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:19.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.761][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-08-10 16:03:19.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:19.782][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-08-10 16:03:19.783][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:19.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-08-10 16:03:19.786][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:19.787][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:19.788][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:19.789][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:19.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:19.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:19.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:19.802][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-08-10 16:03:19.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:19.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:19.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-08-10 16:03:20.206][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-08-10 16:03:20.598][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:20.600][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-08-10 16:03:20.604][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-08-10 16:03:20.606][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-08-10 16:03:20.607][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:20.608][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:20.609][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:20.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.622][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.630][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:20.631][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:20.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:20.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.669][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:20.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.693][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:20.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:20.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:20.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:20.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:20.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:20.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:20.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.751][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-08-10 16:03:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.763][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:20.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.782][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-08-10 16:03:20.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.828][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.845][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-08-10 16:03:20.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.879][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:20.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.895][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:20.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-08-10 16:03:20.913][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:20.914][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:20.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:20.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:20.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:20.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:20.937][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:21.328][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:21.715][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:21.718][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-08-10 16:03:21.722][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-08-10 16:03:21.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.736][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-08-10 16:03:21.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:21.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-08-10 16:03:21.740][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:21.742][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:21.743][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:21.744][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:21.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:21.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:21.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.760][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-08-10 16:03:21.763][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:21.764][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:21.766][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-08-10 16:03:22.154][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-08-10 16:03:22.556][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:22.558][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-08-10 16:03:22.561][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-08-10 16:03:22.564][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-08-10 16:03:22.565][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:22.567][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:22.568][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:22.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.602][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:22.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:22.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.618][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:22.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.646][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:22.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:22.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:22.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:22.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:22.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:22.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.720][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-08-10 16:03:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:22.741][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-08-10 16:03:22.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:22.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-08-10 16:03:22.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:22.751][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:22.752][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:22.753][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:22.754][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:22.755][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:22.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:22.767][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-08-10 16:03:22.769][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:22.770][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:22.771][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-08-10 16:03:23.157][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-08-10 16:03:23.541][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:23.543][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-08-10 16:03:23.546][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-08-10 16:03:23.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-08-10 16:03:23.550][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:23.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:23.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:23.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.572][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:23.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.607][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.634][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:23.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.697][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-08-10 16:03:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:23.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:23.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:23.715][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:24.104][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:24.489][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:24.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-08-10 16:03:24.496][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-08-10 16:03:24.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:24.508][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-08-10 16:03:24.509][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:24.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-08-10 16:03:24.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:24.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:24.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:24.515][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:24.516][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:24.517][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:24.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:24.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-08-10 16:03:24.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:24.543][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:24.545][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-08-10 16:03:24.933][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-08-10 16:03:25.320][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:25.323][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-08-10 16:03:25.326][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-08-10 16:03:25.329][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-08-10 16:03:25.331][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:25.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:25.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:25.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.349][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.358][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:25.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:25.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:25.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.402][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:25.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.429][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.438][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:25.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:25.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:25.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:25.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.505][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-08-10 16:03:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.526][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-08-10 16:03:25.527][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:25.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-08-10 16:03:25.529][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:25.530][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:25.531][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:25.532][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:25.533][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:25.534][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:25.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.546][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-08-10 16:03:25.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:25.549][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:25.550][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-08-10 16:03:25.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-08-10 16:03:26.325][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:26.327][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-08-10 16:03:26.331][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-08-10 16:03:26.333][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-08-10 16:03:26.334][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:26.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:26.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:26.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.369][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:26.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:26.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.377][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.400][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.401][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.407][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:26.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.422][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.430][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:26.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:26.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.432][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:26.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:26.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:26.438][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:26.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:26.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.480][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-08-10 16:03:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:26.502][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-08-10 16:03:26.503][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:26.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-08-10 16:03:26.506][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:26.507][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:26.508][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:26.509][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:26.509][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:26.510][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:26.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:26.527][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-08-10 16:03:26.530][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:26.531][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:26.532][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-08-10 16:03:26.916][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-08-10 16:03:27.322][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:27.325][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-08-10 16:03:27.328][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-08-10 16:03:27.330][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-08-10 16:03:27.331][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:27.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:27.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:27.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.349][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.354][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:27.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:27.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.369][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.379][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:27.385][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.387][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:27.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.402][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:27.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:27.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.409][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:27.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:27.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.412][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:27.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:27.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.469][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-08-10 16:03:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:27.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.506][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-08-10 16:03:27.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.560][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.572][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-08-10 16:03:27.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.612][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.625][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-08-10 16:03:27.664][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:27.665][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:27.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:27.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.696][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:03:27.697][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.698][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:03:27.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:27.723][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:03:27.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.726][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:03:27.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:27.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.785][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:03:27.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.836][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:27.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.880][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:27.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.895][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:03:27.908][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:27.908][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:27.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:27.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:03:27.926][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.927][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:03:27.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.973][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:27.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:03:27.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.980][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:03:27.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.057][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.073][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:28.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.108][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:28.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.153][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:28.180][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.181][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:28.196][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.197][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:03:28.198][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.199][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:03:28.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:28.364][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:03:28.366][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.367][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:03:28.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:28.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.450][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.461][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.465][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:28.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.494][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.500][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:28.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.545][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:28.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:28.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.574][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:28.602][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:28.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:28.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:28.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:29.404][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:29.408][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-08-10 16:03:29.412][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-08-10 16:03:29.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:29.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:29.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.477][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-08-10 16:03:29.478][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:29.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-08-10 16:03:29.481][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:29.482][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:29.483][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:29.484][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:29.486][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:29.487][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:29.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.520][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-08-10 16:03:29.522][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:29.523][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:29.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-08-10 16:03:29.910][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-08-10 16:03:30.296][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:30.299][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-08-10 16:03:30.302][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-08-10 16:03:30.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-08-10 16:03:30.306][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:30.307][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:30.308][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:30.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.330][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:30.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:30.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.339][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.363][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.364][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.370][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.385][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.454][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-08-10 16:03:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.494][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-08-10 16:03:30.495][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:30.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-08-10 16:03:30.498][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:30.499][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:30.500][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:30.501][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:30.502][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:30.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:30.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.514][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-08-10 16:03:30.516][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:30.517][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:30.518][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-08-10 16:03:30.905][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-08-10 16:03:31.289][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:31.291][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-08-10 16:03:31.294][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-08-10 16:03:31.297][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-08-10 16:03:31.298][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:31.299][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:31.300][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:31.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.313][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.321][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:31.322][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:31.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:31.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:31.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:31.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.347][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:31.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:31.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.356][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:31.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:31.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.381][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:31.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:31.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.388][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:31.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:31.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:31.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:31.439][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-08-10 16:03:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:31.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.460][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-08-10 16:03:31.461][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:31.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-08-10 16:03:31.464][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:31.465][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:31.466][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:31.467][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:31.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:31.468][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:31.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.488][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-08-10 16:03:31.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:31.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:31.494][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-08-10 16:03:31.890][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-08-10 16:03:32.277][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:32.280][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-08-10 16:03:32.284][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-08-10 16:03:32.286][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-08-10 16:03:32.288][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:32.289][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:32.291][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:32.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.305][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.314][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:32.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:32.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:32.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:32.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:32.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.363][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:32.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.379][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:32.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:32.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:32.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:32.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:32.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:32.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:32.440][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-08-10 16:03:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:32.452][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:32.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.471][private$selectFields]
biodb.TRACE[2024-08-10 16:03:32.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:32.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:32.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.487][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:32.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.523][private$selectFields]
biodb.TRACE[2024-08-10 16:03:32.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:32.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:32.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-08-10 16:03:32.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.569][private$selectFields]
biodb.TRACE[2024-08-10 16:03:32.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:32.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:32.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:32.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-08-10 16:03:32.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:32.599][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:32.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:32.611][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:32.614][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:32.615][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:32.617][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:33.010][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:33.563][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:33.565][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-08-10 16:03:33.569][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-08-10 16:03:33.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:33.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:33.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:33.645][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:33.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.663][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.664][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.679][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:33.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.709][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.721][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.724][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:33.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.761][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.761][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:33.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.777][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:33.789][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:33.790][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:33.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:33.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:33.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:33.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:33.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:34.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:34.586][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:34.588][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-08-10 16:03:34.592][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-08-10 16:03:34.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:34.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.634][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-08-10 16:03:34.635][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:34.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-08-10 16:03:34.638][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:34.640][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:34.641][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:34.642][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:34.643][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:34.644][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:34.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-08-10 16:03:34.662][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:34.663][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:34.665][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-08-10 16:03:35.055][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-08-10 16:03:35.442][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:35.445][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-08-10 16:03:35.448][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-08-10 16:03:35.451][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-08-10 16:03:35.452][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:35.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:35.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:35.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.493][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.501][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:35.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:35.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.509][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.532][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:35.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.536][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:35.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.552][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:35.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:35.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:35.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.612][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-08-10 16:03:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:35.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.638][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-08-10 16:03:35.639][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:35.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-08-10 16:03:35.642][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:35.643][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:35.644][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:35.645][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:35.646][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:35.647][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:35.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.658][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-08-10 16:03:35.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:35.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:35.663][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-08-10 16:03:36.052][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-08-10 16:03:36.456][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:36.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-08-10 16:03:36.461][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-08-10 16:03:36.464][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-08-10 16:03:36.465][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:36.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:36.467][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:36.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.480][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.488][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:36.489][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:36.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.522][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:36.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.537][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.544][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:36.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:36.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.551][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:36.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:36.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.604][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-08-10 16:03:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:36.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:36.624][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-08-10 16:03:36.625][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:36.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-08-10 16:03:36.627][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:36.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:36.629][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:36.630][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:36.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:36.632][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:36.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:36.643][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-08-10 16:03:36.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:36.646][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:36.647][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-08-10 16:03:37.034][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-08-10 16:03:37.463][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:37.468][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-08-10 16:03:37.475][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-08-10 16:03:37.480][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-08-10 16:03:37.483][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:37.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:37.488][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:37.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:37.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.527][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:37.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:37.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:37.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:37.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.568][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:37.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.612][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:37.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:37.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:37.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:37.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:37.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:37.687][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-08-10 16:03:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:37.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:37.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:37.731][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-08-10 16:03:37.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:37.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-08-10 16:03:37.734][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:37.735][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:37.736][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:37.737][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:37.738][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:37.739][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:37.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:37.752][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-08-10 16:03:37.755][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:37.756][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:37.757][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-08-10 16:03:38.146][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-08-10 16:03:38.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:38.534][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-08-10 16:03:38.538][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-08-10 16:03:38.540][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-08-10 16:03:38.541][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:38.543][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:38.544][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:38.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.566][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.575][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:38.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:38.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:38.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.605][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.606][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.612][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:38.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:38.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.620][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:38.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:38.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:38.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:38.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:38.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.686][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-08-10 16:03:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:38.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.707][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-08-10 16:03:38.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:38.714][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-08-10 16:03:38.716][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:38.717][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:38.718][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:38.719][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:38.720][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:38.721][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:38.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.732][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-08-10 16:03:38.735][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:38.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:38.737][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-08-10 16:03:39.123][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-08-10 16:03:39.509][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:39.511][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-08-10 16:03:39.514][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-08-10 16:03:39.516][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-08-10 16:03:39.518][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:39.519][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:39.520][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:39.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.540][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:39.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:39.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.548][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.579][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:39.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.601][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:39.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:39.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:39.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:39.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:39.662][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-08-10 16:03:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:39.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:39.683][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-08-10 16:03:39.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:39.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-08-10 16:03:39.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:39.687][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:39.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:39.689][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:39.690][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:39.691][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:39.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:39.702][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-08-10 16:03:39.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:39.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:39.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-08-10 16:03:40.092][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-08-10 16:03:40.482][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:40.484][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-08-10 16:03:40.487][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-08-10 16:03:40.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-08-10 16:03:40.491][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:40.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:40.493][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:40.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:40.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.513][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:40.514][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.545][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:40.546][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:40.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.549][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:40.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.610][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:40.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:40.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:40.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:40.664][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-08-10 16:03:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:40.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:40.687][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-08-10 16:03:40.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:40.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-08-10 16:03:40.691][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:40.692][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:40.693][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:40.694][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:40.695][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:40.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:40.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:40.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-08-10 16:03:40.711][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:40.712][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:40.713][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-08-10 16:03:41.103][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-08-10 16:03:41.490][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:41.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-08-10 16:03:41.495][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-08-10 16:03:41.498][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-08-10 16:03:41.499][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:41.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:41.502][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:41.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:41.542][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.550][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:41.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:41.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.567][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:41.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.595][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:41.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.610][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.617][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:41.618][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:41.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:41.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:41.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:41.668][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-08-10 16:03:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:41.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:41.689][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-08-10 16:03:41.690][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:41.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-08-10 16:03:41.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:41.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:41.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:41.695][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:41.696][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:41.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:41.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:41.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-08-10 16:03:41.711][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:41.716][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:41.718][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-08-10 16:03:42.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-08-10 16:03:42.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:42.738][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-08-10 16:03:42.741][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-08-10 16:03:42.744][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-08-10 16:03:42.745][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:42.746][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:42.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:42.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.768][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:42.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:42.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:42.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.802][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:42.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:42.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.876][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-08-10 16:03:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.906][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-08-10 16:03:42.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:42.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-08-10 16:03:42.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:42.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:42.911][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:42.912][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:42.913][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:42.914][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:42.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.925][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-08-10 16:03:42.928][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:42.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:42.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-08-10 16:03:44.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-08-10 16:03:45.271][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:45.273][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-08-10 16:03:45.276][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-08-10 16:03:45.278][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-08-10 16:03:45.279][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:45.281][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:45.282][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:45.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:45.294][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.302][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:45.303][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:45.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:45.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:45.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:45.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:45.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:45.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.336][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:45.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.351][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:45.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:45.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.363][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:45.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:45.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:45.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:45.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.447][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-08-10 16:03:45.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:45.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.470][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-08-10 16:03:45.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:45.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-08-10 16:03:45.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:45.474][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:45.475][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:45.476][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:45.477][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:45.478][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:45.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:45.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:45.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:45.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:45.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:45.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:45.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:45.491][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-08-10 16:03:45.493][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:45.494][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:45.495][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-08-10 16:03:45.881][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-08-10 16:03:46.272][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:46.276][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-08-10 16:03:46.285][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-08-10 16:03:46.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-08-10 16:03:46.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:46.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:46.300][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:46.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:46.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.339][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:46.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:46.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:46.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:46.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:46.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:46.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.363][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.375][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:46.376][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:46.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.384][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:46.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.404][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:46.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.411][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:46.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:46.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.414][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:46.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:46.462][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-08-10 16:03:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:46.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:46.482][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-08-10 16:03:46.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:46.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-08-10 16:03:46.486][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:46.487][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:46.488][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:46.489][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:46.490][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:46.491][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:46.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:46.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:46.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:46.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:46.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:46.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:46.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:46.502][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-08-10 16:03:46.504][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:46.505][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:46.507][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-08-10 16:03:46.896][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-08-10 16:03:47.288][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:47.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-08-10 16:03:47.299][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-08-10 16:03:47.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-08-10 16:03:47.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:47.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:47.313][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:47.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.339][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.362][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:47.363][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.371][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:47.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:47.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:47.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:47.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:47.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.399][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:47.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.401][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.409][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.413][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:47.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.421][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:47.422][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:47.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:47.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.471][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-08-10 16:03:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:47.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:47.617][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-08-10 16:03:47.618][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:47.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-08-10 16:03:47.620][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:47.621][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:47.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:47.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:47.624][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:47.625][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:47.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:47.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:47.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:47.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:47.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:47.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:47.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:47.637][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-08-10 16:03:47.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:47.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:47.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-08-10 16:03:48.039][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-08-10 16:03:48.432][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:48.438][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-08-10 16:03:48.447][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-08-10 16:03:48.453][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-08-10 16:03:48.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:48.496][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:48.499][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:48.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.519][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.527][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:48.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.535][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:48.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:48.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:48.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:48.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:48.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:48.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:48.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.563][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:48.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:48.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.579][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:48.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.587][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:48.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:48.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:48.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.641][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-08-10 16:03:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:48.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:48.689][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-08-10 16:03:48.690][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:48.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-08-10 16:03:48.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:48.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:48.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:48.695][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:48.696][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:48.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:48.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:48.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:48.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:48.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:48.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:48.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:48.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:48.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-08-10 16:03:48.711][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:48.712][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:48.713][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-08-10 16:03:49.105][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-08-10 16:03:49.503][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:49.508][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-08-10 16:03:49.515][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-08-10 16:03:49.520][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-08-10 16:03:49.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:49.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:49.528][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:49.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:49.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.567][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:49.568][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:49.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.578][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:49.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:49.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:49.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:49.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.607][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:49.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.622][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:49.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:49.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:49.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:49.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:49.647][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:49.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:49.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:49.691][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-08-10 16:03:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:49.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:49.712][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-08-10 16:03:49.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:49.714][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-08-10 16:03:49.715][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:49.716][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:49.717][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:49.718][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:49.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:49.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:49.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:49.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:49.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:49.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:49.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:49.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:49.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:49.731][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-08-10 16:03:49.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:49.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:49.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-08-10 16:03:50.122][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-08-10 16:03:50.548][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:50.553][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-08-10 16:03:50.560][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-08-10 16:03:50.565][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-08-10 16:03:50.568][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:50.570][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:50.573][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:50.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:50.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.612][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:50.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:50.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:50.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.622][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:50.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:50.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:50.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.674][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:50.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.690][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:50.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.753][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-08-10 16:03:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:50.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.777][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-08-10 16:03:50.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:50.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-08-10 16:03:50.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:50.782][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:50.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:50.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:50.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:50.786][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:50.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:50.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:50.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:50.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:50.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:50.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:50.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:50.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-08-10 16:03:50.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:50.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:50.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-08-10 16:03:51.197][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-08-10 16:03:51.591][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:51.595][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-08-10 16:03:51.603][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-08-10 16:03:51.609][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-08-10 16:03:51.612][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:51.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:51.643][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:51.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:51.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.672][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:51.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:51.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.675][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.680][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:51.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.683][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:51.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.704][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:51.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.706][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:51.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:51.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.721][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:51.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.724][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.729][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:51.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:51.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:51.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:51.780][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-08-10 16:03:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:51.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:51.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:51.807][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-08-10 16:03:51.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:51.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-08-10 16:03:51.810][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:51.811][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:51.812][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:51.813][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:51.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:51.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:51.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:51.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:51.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:51.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:51.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:51.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:51.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:51.827][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-08-10 16:03:51.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:51.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:51.831][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-08-10 16:03:52.219][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-08-10 16:03:52.608][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:52.613][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-08-10 16:03:52.620][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-08-10 16:03:52.625][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-08-10 16:03:52.628][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:52.631][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:52.633][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:52.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:52.659][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.671][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:52.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.675][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:52.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:52.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:52.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:52.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.711][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:52.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.726][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:52.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.733][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:52.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:52.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:52.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:52.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:52.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:52.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:52.795][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-08-10 16:03:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:52.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:52.816][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-08-10 16:03:52.817][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:52.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-08-10 16:03:52.819][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:52.820][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:52.821][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:52.822][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:52.823][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:52.824][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:52.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:52.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:52.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:52.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:52.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:52.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:52.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:52.835][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-08-10 16:03:52.838][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:52.839][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:52.840][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-08-10 16:03:53.229][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-08-10 16:03:53.650][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:53.658][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-08-10 16:03:53.667][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-08-10 16:03:53.673][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-08-10 16:03:53.676][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:53.679][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:53.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:53.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:53.712][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.723][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:53.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:53.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:53.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:53.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:53.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:53.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:53.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.745][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:53.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.764][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:53.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:53.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:53.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.809][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:53.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:53.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:53.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:53.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:53.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:53.862][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-08-10 16:03:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:53.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:53.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:53.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:53.884][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-08-10 16:03:53.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:53.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-08-10 16:03:53.887][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:53.888][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:53.889][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:53.890][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:53.891][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:53.892][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:53.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:53.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:53.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:53.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:53.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:53.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:53.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:53.903][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-08-10 16:03:53.906][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:53.907][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:53.908][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-08-10 16:03:54.544][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-08-10 16:03:54.934][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:54.939][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-08-10 16:03:54.946][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-08-10 16:03:54.951][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-08-10 16:03:54.954][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:54.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:54.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:03:54.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:54.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:54.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:54.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:54.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:54.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:54.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:54.984][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:54.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:54.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.003][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:55.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:03:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:03:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:55.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:55.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.036][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:55.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:03:55.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.045][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:55.046][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.047][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:03:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.060][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:55.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:55.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.067][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:55.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:55.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:03:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:03:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:55.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:55.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:03:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:03:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.118][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-08-10 16:03:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.150][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:55.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.175][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:55.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.221][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.231][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.233][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:55.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.267][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.269][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.284][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:55.297][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:55.298][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:55.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:55.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:55.334][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:55.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-08-10 16:03:55.336][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:55.337][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-08-10 16:03:55.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.420][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:55.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.439][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:03:55.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.492][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-08-10 16:03:55.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.543][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.561][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-08-10 16:03:55.576][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:55.578][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:55.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:55.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:55.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:55.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-08-10 16:03:55.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:55.602][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-08-10 16:03:55.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:55.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:55.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.944][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.955][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.959][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-08-10 16:03:55.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:55.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:55.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:55.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:55.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:55.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:55.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.989][private$selectFields]
biodb.TRACE[2024-08-10 16:03:55.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:55.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:55.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:55.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:55.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:55.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:55.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.001][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-08-10 16:03:56.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.035][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.046][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-08-10 16:03:56.064][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:56.065][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:56.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-08-10 16:03:56.083][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.084][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-08-10 16:03:56.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.135][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.136][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-08-10 16:03:56.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.139][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-08-10 16:03:56.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:56.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.231][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.253][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-08-10 16:03:56.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.282][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.292][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.298][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-08-10 16:03:56.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.328][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.338][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.339][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.344][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-08-10 16:03:56.357][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:56.357][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:56.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:03:56.389][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.390][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:03:56.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:03:56.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.419][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:03:56.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:56.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.479][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.491][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.495][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-08-10 16:03:56.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.526][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.541][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:56.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.575][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-08-10 16:03:56.604][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:56.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:56.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:03:56.622][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.623][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:03:56.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.667][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:03:56.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.671][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:03:56.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.733][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:56.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.751][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:56.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.797][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:56.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.854][private$selectFields]
biodb.TRACE[2024-08-10 16:03:56.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:56.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:56.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:56.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:56.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:56.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:56.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:56.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:56.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:56.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:03:56.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:56.911][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:03:56.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:56.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:56.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:56.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:56.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:56.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:56.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:56.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:57.093][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:57.095][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:03:57.096][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:57.097][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:03:57.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.174][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:57.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.192][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.203][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:57.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.237][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.247][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.253][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:57.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.283][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:57.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:57.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:57.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:57.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:57.342][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:57.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-08-10 16:03:57.345][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:57.346][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-08-10 16:03:57.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.470][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:57.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.488][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:03:57.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.533][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.544][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.549][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-08-10 16:03:57.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.579][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.595][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-08-10 16:03:57.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:57.608][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:57.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:57.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:57.623][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:57.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-08-10 16:03:57.626][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:57.627][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-08-10 16:03:57.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.691][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:57.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.709][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.721][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.724][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:03:57.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.760][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.761][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.771][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:03:57.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.806][private$selectFields]
biodb.TRACE[2024-08-10 16:03:57.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:57.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:57.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.817][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:57.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-08-10 16:03:57.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:57.835][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:57.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:57.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:57.850][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:57.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-08-10 16:03:57.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:57.854][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-08-10 16:03:57.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:57.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:57.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:57.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:57.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:57.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:57.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:57.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:57.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:57.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:57.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:57.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:58.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.414][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:58.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.432][private$selectFields]
biodb.TRACE[2024-08-10 16:03:58.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:58.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:58.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.442][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.444][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.448][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:03:58.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.478][private$selectFields]
biodb.TRACE[2024-08-10 16:03:58.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:58.480][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:58.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.494][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-08-10 16:03:58.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.524][private$selectFields]
biodb.TRACE[2024-08-10 16:03:58.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:58.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:58.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.540][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:03:58.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.545][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:03:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:03:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-08-10 16:03:58.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:58.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:58.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:58.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:58.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:58.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:58.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:58.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:58.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:58.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:03:58.658][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:58.659][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:58.661][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:03:59.063][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:03:59.693][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:59.698][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-08-10 16:03:59.707][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-08-10 16:03:59.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:59.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:59.859][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-08-10 16:03:59.860][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:59.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-08-10 16:03:59.863][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:59.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:59.865][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:59.866][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:03:59.867][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:59.868][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:03:59.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:59.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:59.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:59.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:59.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:59.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:59.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:59.880][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-08-10 16:03:59.882][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:59.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:59.885][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-08-10 16:04:00.273][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-08-10 16:04:00.666][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:00.671][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-08-10 16:04:00.678][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-08-10 16:04:00.684][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-08-10 16:04:00.687][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:00.690][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:00.693][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:00.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:00.720][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.733][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:00.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:00.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:00.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.744][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:00.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:00.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:00.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:00.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:00.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:00.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:00.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.776][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:00.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:00.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:00.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:00.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:00.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.798][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:00.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:00.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:00.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:00.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:00.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:00.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:00.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:00.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:00.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:00.860][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-08-10 16:04:00.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:00.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:00.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:00.881][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-08-10 16:04:00.882][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:00.884][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-08-10 16:04:00.885][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:00.886][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:00.887][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:00.888][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:00.889][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:00.890][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:00.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:00.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:00.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:00.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:00.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:00.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:00.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:00.901][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-08-10 16:04:00.904][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:00.904][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:00.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-08-10 16:04:01.292][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-08-10 16:04:01.683][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:01.685][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-08-10 16:04:01.689][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-08-10 16:04:01.691][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-08-10 16:04:01.692][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:01.693][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:01.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:01.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:01.707][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.715][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:01.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:01.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:01.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.722][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:01.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:01.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:01.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:01.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.762][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:01.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:01.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.774][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.779][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:01.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:01.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.788][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:01.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:01.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:01.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:01.846][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-08-10 16:04:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:01.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:01.859][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:01.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:01.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.882][private$selectFields]
biodb.TRACE[2024-08-10 16:04:01.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:01.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:01.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.899][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.900][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:01.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:01.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.933][private$selectFields]
biodb.TRACE[2024-08-10 16:04:01.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:01.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:01.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:01.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:01.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:01.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:01.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:01.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:01.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:01.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:01.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:01.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:01.999][private$selectFields]
biodb.TRACE[2024-08-10 16:04:02.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:02.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:02.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:02.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:02.012][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:02.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.016][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:02.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-08-10 16:04:02.030][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:02.031][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:02.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:02.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:02.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:02.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:02.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:02.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:02.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:02.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:02.048][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:02.049][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:02.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:04:03.453][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:04:04.173][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:04.178][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-08-10 16:04:04.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-08-10 16:04:04.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.223][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-08-10 16:04:04.225][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:04.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-08-10 16:04:04.230][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:04.231][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:04.233][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:04.235][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:04.236][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:04.237][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:04.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:04.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:04.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:04.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:04.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:04.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:04.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:04.253][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-08-10 16:04:04.256][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:04.257][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:04.258][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-08-10 16:04:04.643][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-08-10 16:04:05.029][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:05.032][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-08-10 16:04:05.038][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-08-10 16:04:05.044][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-08-10 16:04:05.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:05.050][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:05.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:05.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:05.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:05.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:05.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:05.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:05.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:05.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.130][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:05.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:05.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:05.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:05.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:05.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:05.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:05.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:05.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:05.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:05.204][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-08-10 16:04:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:05.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:05.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:05.255][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-08-10 16:04:05.256][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:05.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-08-10 16:04:05.259][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:05.260][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:05.261][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:05.262][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:05.263][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:05.264][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:05.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:05.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:05.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:05.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:05.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:05.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:05.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:05.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-08-10 16:04:05.277][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:05.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:05.279][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-08-10 16:04:05.666][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-08-10 16:04:06.108][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:06.116][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-08-10 16:04:06.125][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-08-10 16:04:06.131][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-08-10 16:04:06.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:06.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:06.140][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:06.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.182][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:06.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:06.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:06.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:06.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:06.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:06.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:06.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.225][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:06.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.242][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:06.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:06.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:06.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:06.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:06.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:06.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:06.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:06.308][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-08-10 16:04:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:06.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:06.343][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:06.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.364][private$selectFields]
biodb.TRACE[2024-08-10 16:04:06.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:06.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:06.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.377][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.382][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-08-10 16:04:06.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.415][private$selectFields]
biodb.TRACE[2024-08-10 16:04:06.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:06.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:06.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.447][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:06.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.480][private$selectFields]
biodb.TRACE[2024-08-10 16:04:06.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:06.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:06.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.491][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:06.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:06.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:06.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:04:06.508][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:06.509][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:06.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:06.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:06.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:06.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:06.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:06.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:06.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:06.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:06.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:06.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:06.527][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:04:06.912][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:04:07.335][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:07.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-08-10 16:04:07.342][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-08-10 16:04:07.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:07.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:07.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:07.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:07.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:07.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:07.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:07.354][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-08-10 16:04:07.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:07.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-08-10 16:04:07.358][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:07.359][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:07.360][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:07.360][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:07.361][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:07.362][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:07.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:07.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:07.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:07.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:07.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:07.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:07.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:07.374][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-08-10 16:04:07.376][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:07.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:07.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-08-10 16:04:07.769][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-08-10 16:04:08.168][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:08.171][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-08-10 16:04:08.176][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-08-10 16:04:08.180][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-08-10 16:04:08.183][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:08.185][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:08.187][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:08.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:08.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.220][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:08.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.230][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:08.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:08.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.258][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:08.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:08.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:08.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:08.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.281][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:08.282][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:08.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.288][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:08.289][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:08.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:08.332][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-08-10 16:04:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:08.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:08.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:08.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:08.363][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-08-10 16:04:08.364][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:08.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-08-10 16:04:08.367][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:08.368][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:08.369][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:08.370][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:08.370][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:08.371][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:08.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:08.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:08.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:08.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:08.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:08.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:08.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:08.383][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-08-10 16:04:08.385][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:08.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:08.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-08-10 16:04:08.775][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-08-10 16:04:09.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:09.177][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-08-10 16:04:09.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-08-10 16:04:09.194][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-08-10 16:04:09.197][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:09.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:09.203][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:09.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:09.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.241][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:09.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.244][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:09.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:09.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:09.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:09.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:09.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:09.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:09.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:09.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:09.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:09.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:09.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:09.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:09.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:09.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:09.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.279][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:09.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:09.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.295][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:09.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:09.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:09.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:09.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.304][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:09.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:09.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:09.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:09.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:09.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:09.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:09.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:09.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:09.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:09.361][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-08-10 16:04:09.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:09.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:09.384][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-08-10 16:04:09.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:09.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-08-10 16:04:09.388][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:09.389][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:09.390][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:09.392][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:09.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:09.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:09.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:09.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:09.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:09.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:09.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:09.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:09.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:09.406][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-08-10 16:04:09.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:09.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:09.411][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-08-10 16:04:09.799][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-08-10 16:04:10.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:10.234][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-08-10 16:04:10.242][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-08-10 16:04:10.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-08-10 16:04:10.251][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:10.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:10.256][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:10.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:10.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.296][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:10.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:10.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:10.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:10.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:10.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:10.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:10.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:10.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:10.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:10.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:10.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:10.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.337][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.370][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:10.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.430][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-08-10 16:04:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:10.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:10.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:10.450][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-08-10 16:04:10.451][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:10.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-08-10 16:04:10.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:10.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:10.456][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:10.457][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:10.458][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:10.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:10.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:10.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:10.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:10.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:10.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:10.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:10.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:10.470][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-08-10 16:04:10.472][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:10.473][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:10.474][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-08-10 16:04:10.863][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-08-10 16:04:11.249][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:11.254][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-08-10 16:04:11.261][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-08-10 16:04:11.266][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-08-10 16:04:11.269][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:11.272][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:11.274][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:11.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.300][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.313][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:11.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:11.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.323][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:11.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:11.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:11.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:11.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:11.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:11.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.349][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.351][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.356][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:11.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:11.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:11.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:11.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:11.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:11.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:11.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:11.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:11.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:11.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:11.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.430][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-08-10 16:04:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.470][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:11.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.488][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.504][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-08-10 16:04:11.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.533][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.544][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.549][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-08-10 16:04:11.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.578][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-08-10 16:04:11.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:11.608][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:11.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:11.641][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:11.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:11.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:11.646][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:11.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:11.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:11.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:11.656][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:11.658][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:11.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.727][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:11.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.747][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.759][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.764][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:11.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.810][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:11.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.859][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.877][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:11.890][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:11.891][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:11.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:11.904][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:11.907][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:11.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:04:11.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:11.911][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:04:11.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:11.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:11.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:11.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:11.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:11.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:11.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:11.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:11.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:11.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:11.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.994][private$selectFields]
biodb.TRACE[2024-08-10 16:04:11.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:11.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:11.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:11.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:11.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:12.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.040][private$selectFields]
biodb.TRACE[2024-08-10 16:04:12.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:12.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:12.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.052][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:12.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.091][private$selectFields]
biodb.TRACE[2024-08-10 16:04:12.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:12.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:12.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:12.120][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:12.121][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:12.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:12.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:12.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:12.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:04:12.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:12.139][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:04:12.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:12.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:12.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:12.201][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:12.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.220][private$selectFields]
biodb.TRACE[2024-08-10 16:04:12.220][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:12.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:12.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:12.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.266][private$selectFields]
biodb.TRACE[2024-08-10 16:04:12.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:12.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:12.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:04:12.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:12.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.312][private$selectFields]
biodb.TRACE[2024-08-10 16:04:12.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:12.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:12.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:12.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:12.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:04:12.341][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:12.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:12.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:12.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:12.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:12.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:12.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:12.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:12.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:12.369][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:12.377][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:12.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:12.379][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:04:12.775][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:04:13.166][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:13.170][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-08-10 16:04:13.179][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-08-10 16:04:13.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:13.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:13.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:13.262][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-08-10 16:04:13.263][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:13.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-08-10 16:04:13.265][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:13.266][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:13.267][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:13.268][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:13.269][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:13.270][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:13.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:13.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:13.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:13.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:13.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:13.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:13.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:13.281][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-08-10 16:04:13.284][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:13.285][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:13.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-08-10 16:04:13.682][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-08-10 16:04:14.087][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:14.093][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-08-10 16:04:14.101][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-08-10 16:04:14.107][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-08-10 16:04:14.110][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:14.113][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:14.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:14.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:14.146][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.159][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:14.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:14.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.169][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:14.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:14.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:14.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:14.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:14.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:14.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:14.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:14.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:14.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:14.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:14.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:14.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:14.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:14.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:14.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:14.284][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-08-10 16:04:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:14.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:14.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:14.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:14.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:14.307][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-08-10 16:04:14.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:14.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-08-10 16:04:14.311][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:14.312][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:14.313][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:14.314][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:14.315][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:14.316][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:14.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:14.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:14.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:14.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:14.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:14.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:14.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:14.329][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-08-10 16:04:14.331][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:14.332][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:14.334][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-08-10 16:04:14.721][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-08-10 16:04:15.112][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:15.117][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-08-10 16:04:15.125][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-08-10 16:04:15.155][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-08-10 16:04:15.171][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:15.173][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:15.175][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:15.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:15.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.201][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.209][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.212][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:15.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.241][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.244][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:15.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.256][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:15.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:15.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.265][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.266][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:15.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:15.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:15.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:15.316][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-08-10 16:04:15.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:15.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:15.337][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-08-10 16:04:15.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:15.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-08-10 16:04:15.340][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:15.341][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:15.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:15.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:15.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:15.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:15.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:15.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:15.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:15.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:15.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:15.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:15.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:15.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-08-10 16:04:15.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:15.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:15.361][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-08-10 16:04:15.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-08-10 16:04:16.176][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:16.181][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-08-10 16:04:16.189][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-08-10 16:04:16.195][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-08-10 16:04:16.198][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:16.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:16.203][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:16.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:16.228][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.241][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:16.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:16.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:16.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.252][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:16.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:16.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:16.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:16.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:16.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:16.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.285][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:16.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:16.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.288][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:16.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:16.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.315][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:16.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:16.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:16.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:16.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.323][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:16.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:16.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.399][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-08-10 16:04:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:16.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:16.422][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-08-10 16:04:16.423][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:16.424][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-08-10 16:04:16.426][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:16.427][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:16.428][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:16.429][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:16.430][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:16.431][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:16.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:16.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:16.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:16.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:16.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:16.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:16.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:16.443][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-08-10 16:04:16.446][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:16.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:16.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-08-10 16:04:16.835][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-08-10 16:04:17.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:17.235][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-08-10 16:04:17.243][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-08-10 16:04:17.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-08-10 16:04:17.252][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:17.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:17.257][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:17.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:17.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.296][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:17.297][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:17.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:17.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.310][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:17.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:17.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:17.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:17.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:17.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:17.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:17.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.337][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:17.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:17.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.341][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:17.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:17.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:17.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:17.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:17.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:17.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:17.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:17.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:17.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:17.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:17.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:17.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.420][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-08-10 16:04:17.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:17.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:17.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:17.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.443][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-08-10 16:04:17.444][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:17.446][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-08-10 16:04:17.447][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:17.448][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:17.449][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:17.450][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:17.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:17.452][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:17.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:17.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:17.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:17.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:17.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:17.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:17.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:17.464][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-08-10 16:04:17.466][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:17.467][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:17.469][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-08-10 16:04:17.856][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-08-10 16:04:18.251][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:18.254][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-08-10 16:04:18.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-08-10 16:04:18.264][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-08-10 16:04:18.266][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:18.268][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:18.270][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:18.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.306][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.310][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.316][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:18.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:18.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:18.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.325][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:18.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:18.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:18.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:18.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:18.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:18.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:18.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:18.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:18.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:18.349][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:18.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.351][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.352][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:18.353][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:18.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.367][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:18.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:18.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.374][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:18.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:18.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.377][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:18.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:18.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:18.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.384][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.424][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-08-10 16:04:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:18.456][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:18.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.475][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.491][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:18.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.521][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:18.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:18.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.567][private$selectFields]
biodb.TRACE[2024-08-10 16:04:18.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:18.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:18.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:18.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:18.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:18.600][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:18.601][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:18.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:18.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:18.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:18.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:18.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:18.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:18.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:18.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:18.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:18.616][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:18.623][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-08-10 16:04:19.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-08-10 16:04:19.785][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:19.791][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-08-10 16:04:19.800][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-08-10 16:04:19.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:19.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:19.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:19.892][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-08-10 16:04:19.893][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:19.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-08-10 16:04:19.896][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:19.897][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:19.898][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:19.899][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:19.900][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:19.901][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:19.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:19.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:19.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:19.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:19.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:19.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:19.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:19.914][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-08-10 16:04:19.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:19.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:19.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-08-10 16:04:20.305][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-08-10 16:04:20.733][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:20.737][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-08-10 16:04:20.745][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-08-10 16:04:20.751][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-08-10 16:04:20.754][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:20.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:20.760][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:20.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:20.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.801][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:20.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:20.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.833][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:20.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:20.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.842][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:20.843][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:20.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:20.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:20.922][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-08-10 16:04:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:20.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:20.945][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-08-10 16:04:20.946][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:20.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-08-10 16:04:20.949][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:20.950][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:20.951][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:20.952][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:20.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:20.954][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:20.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:20.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:20.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:20.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:20.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:20.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:20.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:20.983][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-08-10 16:04:20.986][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:20.987][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:20.988][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-08-10 16:04:21.387][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-08-10 16:04:21.783][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:21.787][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-08-10 16:04:21.795][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-08-10 16:04:21.800][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-08-10 16:04:21.803][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:21.806][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:21.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:21.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:21.834][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.847][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:21.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.857][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:21.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:21.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.883][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:21.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.886][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:21.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.901][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.908][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:21.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:21.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:21.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:21.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:21.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:21.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.966][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-08-10 16:04:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:21.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:21.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:21.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:21.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:21.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:21.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:21.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:21.992][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-08-10 16:04:21.993][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:21.995][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-08-10 16:04:21.996][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:21.997][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:21.998][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:22.000][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:22.001][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:22.002][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:22.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:22.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:22.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:22.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:22.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:22.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:22.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:22.015][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-08-10 16:04:22.018][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:22.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:22.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-08-10 16:04:22.611][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-08-10 16:04:23.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:23.014][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-08-10 16:04:23.021][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-08-10 16:04:23.027][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-08-10 16:04:23.030][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:23.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:23.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:23.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:23.064][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.077][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.118][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:23.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:23.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.142][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:23.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:23.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:23.217][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-08-10 16:04:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:23.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:23.239][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-08-10 16:04:23.240][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:23.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-08-10 16:04:23.243][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:23.244][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:23.245][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:23.246][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:23.247][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:23.248][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:23.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:23.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:23.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:23.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:23.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:23.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:23.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:23.260][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-08-10 16:04:23.263][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:23.264][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:23.265][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-08-10 16:04:23.656][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-08-10 16:04:24.050][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:24.055][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-08-10 16:04:24.062][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-08-10 16:04:24.067][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-08-10 16:04:24.070][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:24.073][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:24.076][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:24.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:24.103][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.116][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.127][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:24.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.156][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:24.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.171][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.178][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:24.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:24.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.230][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-08-10 16:04:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:24.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:24.251][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-08-10 16:04:24.252][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:24.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-08-10 16:04:24.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:24.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:24.256][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:24.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:24.258][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:24.259][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:24.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:24.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:24.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:24.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:24.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:24.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:24.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:24.271][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-08-10 16:04:24.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:24.274][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:24.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-08-10 16:04:24.664][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-08-10 16:04:25.100][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:25.104][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-08-10 16:04:25.111][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-08-10 16:04:25.117][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-08-10 16:04:25.120][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:25.122][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:25.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:25.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:25.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.203][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.206][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.211][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:25.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:25.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.239][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:25.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:25.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:25.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:25.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.318][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-08-10 16:04:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:25.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:25.340][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-08-10 16:04:25.341][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:25.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-08-10 16:04:25.344][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:25.345][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:25.346][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:25.347][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:25.348][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:25.349][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:25.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:25.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:25.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:25.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:25.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:25.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:25.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:25.361][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-08-10 16:04:25.364][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:25.365][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:25.366][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-08-10 16:04:25.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-08-10 16:04:26.143][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:26.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-08-10 16:04:26.156][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-08-10 16:04:26.162][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-08-10 16:04:26.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:26.168][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:26.171][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:26.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:26.198][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.211][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.212][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:26.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:26.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:26.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:26.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:26.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.251][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:26.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.268][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.276][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:26.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:26.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:26.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.338][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-08-10 16:04:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:26.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:26.359][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-08-10 16:04:26.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:26.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-08-10 16:04:26.362][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:26.363][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:26.364][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:26.365][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:26.366][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:26.367][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:26.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:26.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:26.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:26.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:26.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:26.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:26.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:26.378][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-08-10 16:04:26.380][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:26.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:26.383][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-08-10 16:04:26.770][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-08-10 16:04:27.160][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:27.164][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-08-10 16:04:27.171][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-08-10 16:04:27.177][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-08-10 16:04:27.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:27.182][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:27.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:27.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:27.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.223][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.225][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.234][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:27.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.263][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:27.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:27.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:27.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:27.337][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-08-10 16:04:27.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:27.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:27.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:27.358][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-08-10 16:04:27.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:27.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-08-10 16:04:27.362][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:27.363][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:27.364][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:27.365][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:27.366][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:27.366][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:27.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:27.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:27.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:27.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:27.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:27.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:27.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:27.378][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-08-10 16:04:27.380][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:27.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:27.383][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-08-10 16:04:27.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-08-10 16:04:28.201][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:28.205][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-08-10 16:04:28.212][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-08-10 16:04:28.218][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-08-10 16:04:28.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:28.223][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:28.226][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:28.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:28.262][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.274][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.304][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:28.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:28.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:28.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:28.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.341][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.343][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:28.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:28.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:28.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:28.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:28.422][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-08-10 16:04:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:28.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:28.445][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-08-10 16:04:28.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:28.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-08-10 16:04:28.449][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:28.450][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:28.451][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:28.452][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:28.453][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:28.454][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:28.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:28.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:28.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:28.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:28.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:28.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:28.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:28.466][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-08-10 16:04:28.469][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:28.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:28.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-08-10 16:04:28.868][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-08-10 16:04:29.256][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:29.261][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-08-10 16:04:29.268][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-08-10 16:04:29.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-08-10 16:04:29.277][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:29.280][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:29.282][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:29.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:29.310][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.323][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:29.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:29.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:29.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.351][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:29.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.356][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:29.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.372][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:29.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:29.434][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-08-10 16:04:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:29.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:29.464][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-08-10 16:04:29.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:29.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-08-10 16:04:29.467][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:29.468][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:29.469][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:29.470][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:29.471][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:29.472][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:29.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:29.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:29.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:29.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:29.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:29.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:29.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:29.483][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-08-10 16:04:29.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:29.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:29.488][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-08-10 16:04:29.879][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-08-10 16:04:30.268][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:30.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-08-10 16:04:30.279][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-08-10 16:04:30.284][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-08-10 16:04:30.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:30.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:30.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:30.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:30.318][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.331][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.342][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:30.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:30.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.363][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:30.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:30.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.396][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:30.437][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-08-10 16:04:30.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:30.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:30.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:30.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:30.458][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-08-10 16:04:30.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:30.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-08-10 16:04:30.462][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:30.463][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:30.464][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:30.465][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:30.466][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:30.467][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:30.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:30.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:30.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:30.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:30.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:30.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:30.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:30.479][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-08-10 16:04:30.481][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:30.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:30.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-08-10 16:04:30.870][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-08-10 16:04:31.302][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:31.307][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-08-10 16:04:31.314][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-08-10 16:04:31.319][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-08-10 16:04:31.322][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:31.324][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:31.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:31.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:31.352][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.371][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:31.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.412][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:31.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:31.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:31.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.449][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.456][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:31.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:31.519][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-08-10 16:04:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:31.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:31.541][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-08-10 16:04:31.542][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:31.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-08-10 16:04:31.545][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:31.546][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:31.547][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:31.548][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:31.549][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:31.550][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:31.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:31.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:31.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:31.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:31.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:31.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:31.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:31.562][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-08-10 16:04:31.565][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:31.566][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:31.567][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-08-10 16:04:31.956][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-08-10 16:04:32.348][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:32.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-08-10 16:04:32.361][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-08-10 16:04:32.367][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-08-10 16:04:32.370][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:32.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:32.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:32.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:32.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:32.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:32.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:32.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:32.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:32.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:32.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.408][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.416][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.426][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:32.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:32.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.456][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:32.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.473][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:32.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:32.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:32.535][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-08-10 16:04:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:32.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:32.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:32.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:32.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:32.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:32.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:32.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:32.556][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-08-10 16:04:32.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:32.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-08-10 16:04:32.560][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:32.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:32.562][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:32.563][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:32.564][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:32.564][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:32.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:32.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:32.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:32.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:32.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:32.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:32.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:32.585][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-08-10 16:04:32.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:32.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:32.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-08-10 16:04:32.976][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-08-10 16:04:33.365][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:33.368][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-08-10 16:04:33.375][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-08-10 16:04:33.380][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-08-10 16:04:33.383][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:33.386][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:33.388][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:33.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:33.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:33.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:33.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:33.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:33.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:33.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:33.412][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.424][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:33.426][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.428][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.434][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:33.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:33.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.438][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:33.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:33.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:33.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:33.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.462][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:33.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:33.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.470][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.477][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:33.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:33.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:33.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:33.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:33.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:33.535][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-08-10 16:04:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:33.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:33.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:33.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:33.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:33.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:33.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:33.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:33.556][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-08-10 16:04:33.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:33.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-08-10 16:04:33.560][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:33.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:33.562][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:33.563][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:33.564][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:33.565][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:33.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:33.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:33.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:33.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:33.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:33.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:33.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:33.576][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-08-10 16:04:33.579][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:33.580][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:33.581][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-08-10 16:04:33.965][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-08-10 16:04:34.402][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:34.410][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-08-10 16:04:34.418][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-08-10 16:04:34.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-08-10 16:04:34.428][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:34.431][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:34.434][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:34.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:34.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:34.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:34.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:34.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:34.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:34.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:34.463][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.475][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:34.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:34.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.478][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.484][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:34.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:34.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:34.494][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:34.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:34.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:34.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:34.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:34.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.514][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:34.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.530][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:34.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:34.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:34.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:34.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:34.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:34.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:34.617][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-08-10 16:04:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:34.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:34.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:34.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:34.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:34.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:34.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:34.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:34.640][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-08-10 16:04:34.641][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:34.642][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-08-10 16:04:34.643][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:34.644][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:34.646][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:34.647][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:34.648][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:34.648][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:34.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:34.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:34.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:34.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:34.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:34.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:34.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:34.661][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-08-10 16:04:34.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:34.664][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:34.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-08-10 16:04:35.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-08-10 16:04:35.446][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:35.450][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-08-10 16:04:35.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-08-10 16:04:35.463][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-08-10 16:04:35.466][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:35.469][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:35.472][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:35.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:35.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:35.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:35.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:35.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:35.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:35.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:35.498][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.511][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:35.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.523][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:35.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:35.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:35.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:35.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:35.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:35.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.553][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:35.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:35.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.557][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:35.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:35.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:35.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:35.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:35.629][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-08-10 16:04:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:35.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:35.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:35.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:35.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:35.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:35.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:35.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:35.650][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-08-10 16:04:35.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:35.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-08-10 16:04:35.654][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:35.655][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:35.656][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:35.657][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:35.658][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:35.658][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:35.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:35.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:35.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:35.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:35.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:35.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:35.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:35.670][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-08-10 16:04:35.672][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:35.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:35.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-08-10 16:04:36.060][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-08-10 16:04:36.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:36.459][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-08-10 16:04:36.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-08-10 16:04:36.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-08-10 16:04:36.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:36.496][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:36.498][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:36.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:36.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:36.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:36.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:36.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:36.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:36.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:36.518][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.528][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:36.530][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:36.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:36.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:36.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:36.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:36.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:36.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:36.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:36.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.564][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:36.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.579][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:36.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:36.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:36.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:36.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:36.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:36.637][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-08-10 16:04:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:36.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:36.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:36.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:36.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:36.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:36.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:36.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:36.658][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-08-10 16:04:36.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:36.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-08-10 16:04:36.662][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:36.663][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:36.664][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:36.665][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:36.665][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:36.666][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:36.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:36.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:36.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:36.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:36.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:36.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:36.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:36.678][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-08-10 16:04:36.680][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:36.681][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:36.682][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-08-10 16:04:37.069][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-08-10 16:04:37.493][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:37.501][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-08-10 16:04:37.510][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-08-10 16:04:37.516][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-08-10 16:04:37.519][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:37.522][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:37.525][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:37.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:37.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:37.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:37.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:37.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:37.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:37.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:37.556][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.572][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:37.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:37.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.584][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:37.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:37.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:37.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:37.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:37.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:37.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:37.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:37.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:37.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.617][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:37.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:37.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:37.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:37.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:37.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:37.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:37.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:37.719][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-08-10 16:04:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:37.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:37.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:37.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:37.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:37.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:37.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:37.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:37.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:37.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:37.742][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-08-10 16:04:37.743][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:37.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-08-10 16:04:37.745][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:37.747][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:37.748][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:37.749][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:37.750][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:37.751][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:37.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:37.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:37.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:37.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:37.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:37.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:37.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:37.763][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-08-10 16:04:37.765][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:37.766][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:37.768][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-08-10 16:04:38.154][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-08-10 16:04:38.628][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:38.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-08-10 16:04:38.640][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-08-10 16:04:38.646][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-08-10 16:04:38.649][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:38.652][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:38.655][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:38.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:38.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:38.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:38.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:38.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:38.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:38.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:38.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.695][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:38.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:38.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.705][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:38.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:38.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:38.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:38.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:38.733][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:38.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.736][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:38.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:38.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.752][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:38.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:38.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.760][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:38.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:38.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:38.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:38.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:38.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:38.813][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-08-10 16:04:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:38.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:38.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:38.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:38.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:38.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:38.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:38.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:38.834][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-08-10 16:04:38.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:38.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-08-10 16:04:38.837][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:38.838][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:38.839][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:38.840][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:38.841][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:38.842][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:38.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:38.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:38.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:38.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:38.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:38.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:38.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:38.854][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-08-10 16:04:38.856][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:38.857][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:38.858][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-08-10 16:04:39.250][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-08-10 16:04:39.749][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:39.753][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-08-10 16:04:39.760][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-08-10 16:04:39.765][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-08-10 16:04:39.768][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:39.771][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:39.773][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:39.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:39.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:39.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:39.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:39.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:39.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:39.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:39.800][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.825][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:39.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:39.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:39.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:39.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:39.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:39.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:39.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:39.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:39.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:39.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.860][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:39.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:39.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.875][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:39.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:39.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:39.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:39.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:39.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:39.933][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-08-10 16:04:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:39.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:39.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:39.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:39.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:39.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:39.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:39.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:39.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:39.954][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-08-10 16:04:39.955][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:39.956][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-08-10 16:04:39.957][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:39.958][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:39.959][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:39.960][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:39.961][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:39.962][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:39.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:39.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:39.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:39.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:39.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:39.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:39.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:39.973][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-08-10 16:04:39.976][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:39.977][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:39.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-08-10 16:04:40.373][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-08-10 16:04:40.814][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:40.820][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-08-10 16:04:40.827][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-08-10 16:04:40.832][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-08-10 16:04:40.835][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:40.837][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:40.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:40.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:40.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:40.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:40.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:40.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:40.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:40.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:40.867][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.878][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:40.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:40.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.888][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:40.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:40.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:40.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:40.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:40.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:40.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:40.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:40.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:40.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.918][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:40.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:40.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:40.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:40.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:40.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.942][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:40.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:40.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:40.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:40.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.954][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:41.018][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-08-10 16:04:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:41.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:41.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:41.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:41.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:41.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:41.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:41.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:41.040][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-08-10 16:04:41.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:41.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-08-10 16:04:41.044][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:41.045][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:41.046][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:41.047][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:41.048][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:41.049][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:41.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:41.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:41.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:41.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:41.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:41.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:41.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:41.062][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-08-10 16:04:41.064][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:41.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:41.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-08-10 16:04:41.456][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-08-10 16:04:41.845][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:41.849][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-08-10 16:04:41.857][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-08-10 16:04:41.862][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-08-10 16:04:41.865][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:41.868][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:41.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:41.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:41.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:41.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:41.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:41.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:41.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:41.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:41.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:41.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.911][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:41.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:41.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.922][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:41.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:41.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:41.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:41.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:41.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:41.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:41.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.952][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:41.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.969][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:41.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:41.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.977][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:41.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:41.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:41.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:41.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:42.030][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-08-10 16:04:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:42.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:42.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:42.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:42.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:42.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:42.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:42.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:42.051][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-08-10 16:04:42.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:42.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-08-10 16:04:42.054][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:42.055][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:42.056][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:42.057][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:42.058][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:42.059][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:42.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:42.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:42.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:42.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:42.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:42.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:42.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:42.071][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-08-10 16:04:42.073][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:42.074][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:42.075][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-08-10 16:04:42.476][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-08-10 16:04:43.413][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:43.415][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-08-10 16:04:43.422][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-08-10 16:04:43.428][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-08-10 16:04:43.431][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:43.433][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:43.436][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:43.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:43.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:43.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:43.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:43.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:43.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:43.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:43.460][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.472][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:43.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:43.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.482][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:43.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:43.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:43.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:43.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:43.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:43.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:43.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:43.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.522][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:43.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:43.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.536][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:43.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:43.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.544][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:43.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:43.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:43.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:43.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.551][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:43.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:43.595][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-08-10 16:04:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:43.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:43.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:43.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:43.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:43.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:43.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:43.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:43.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:43.616][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-08-10 16:04:43.616][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:43.618][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-08-10 16:04:43.619][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:43.620][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:43.621][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:43.622][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:43.623][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:43.624][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:43.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:43.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:43.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:43.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:43.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:43.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:43.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:43.636][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-08-10 16:04:43.638][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:43.639][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:43.640][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-08-10 16:04:44.027][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-08-10 16:04:44.468][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:44.475][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-08-10 16:04:44.483][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-08-10 16:04:44.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-08-10 16:04:44.492][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:44.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:44.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:44.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:44.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:44.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:44.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:44.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:44.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:44.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:44.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.537][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:44.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:44.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.547][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:44.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:44.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:44.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:44.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:44.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.573][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:44.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:44.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.577][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:44.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:44.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:44.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:44.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:44.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.602][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:44.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:44.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:44.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:44.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:44.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:44.658][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-08-10 16:04:44.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:44.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:44.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:44.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:44.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:44.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:44.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:44.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:44.701][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-08-10 16:04:44.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:44.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-08-10 16:04:44.704][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:44.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:44.706][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:44.707][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:44.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:44.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:44.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:44.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:44.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:44.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:44.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:44.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:44.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:44.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-08-10 16:04:44.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:44.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:44.727][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-08-10 16:04:45.117][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-08-10 16:04:45.531][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:45.536][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-08-10 16:04:45.543][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-08-10 16:04:45.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-08-10 16:04:45.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:45.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:45.558][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:45.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:45.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:45.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:45.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:45.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:45.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:45.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:45.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.598][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:45.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:45.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.609][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:45.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:45.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:45.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:45.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:45.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:45.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.635][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:45.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:45.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.639][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:45.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:45.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.650][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:45.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:45.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:45.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:45.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:45.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:45.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:45.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:45.716][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-08-10 16:04:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:45.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:45.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:45.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:45.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:45.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:45.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:45.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:45.737][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-08-10 16:04:45.738][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:45.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-08-10 16:04:45.741][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:45.742][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:45.743][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:45.744][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:45.744][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:45.745][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:45.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:45.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:45.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:45.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:45.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:45.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:45.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:45.757][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-08-10 16:04:45.759][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:45.760][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:45.762][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-08-10 16:04:46.151][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-08-10 16:04:46.544][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:46.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-08-10 16:04:46.555][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-08-10 16:04:46.561][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-08-10 16:04:46.564][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:46.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:46.569][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:46.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:46.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:46.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:46.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:46.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:46.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:46.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:46.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.607][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:46.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.618][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:46.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:46.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:46.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:46.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:46.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:46.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:46.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:46.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.662][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:46.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:46.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.677][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:46.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:46.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.684][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:46.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:46.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.688][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.691][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:46.692][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:46.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:46.734][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-08-10 16:04:46.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:46.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:46.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:46.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:46.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:46.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:46.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:46.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:46.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:46.755][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-08-10 16:04:46.756][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:04:46.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-08-10 16:04:46.759][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:04:46.760][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:04:46.761][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:04:46.762][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-08-10 16:04:46.762][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:04:46.763][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:04:46.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:46.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:46.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:46.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:46.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:46.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:46.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:46.775][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-08-10 16:04:46.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:04:46.778][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:04:46.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-08-10 16:04:47.166][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-08-10 16:04:47.577][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:04:47.583][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-08-10 16:04:47.590][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-08-10 16:04:47.594][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-08-10 16:04:47.597][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:04:47.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:04:47.601][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-08-10 16:04:47.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.639][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:47.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:47.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.649][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:47.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:47.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.652][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:47.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:47.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:47.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:47.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:47.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.674][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:47.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:47.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.679][ef$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:47.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:47.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-08-10 16:04:47.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:47.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:47.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:47.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.704][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:47.705][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:47.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-08-10 16:04:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:47.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:47.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:47.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:47.760][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-08-10 16:04:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:47.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:47.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:47.836][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:47.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.856][private$selectFields]
biodb.TRACE[2024-08-10 16:04:47.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:47.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:47.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.873][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:47.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.905][private$selectFields]
biodb.TRACE[2024-08-10 16:04:47.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:47.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:47.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:47.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.954][private$selectFields]
biodb.TRACE[2024-08-10 16:04:47.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:47.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:47.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.965][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:47.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:47.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:47.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:47.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:47.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:47.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:47.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:47.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:47.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:47.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:47.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:47.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:47.999][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:48.000][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:48.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:48.003][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:48.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.095][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:48.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.113][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.119][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:48.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.159][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:48.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.205][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:48.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:48.235][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:48.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:48.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:48.265][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:48.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:48.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:48.269][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:48.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.436][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:48.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.454][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.465][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.470][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:48.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.499][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.516][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:48.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.546][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.558][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.563][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-08-10 16:04:48.576][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:48.577][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:48.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:48.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:48.592][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:48.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-08-10 16:04:48.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:48.596][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-08-10 16:04:48.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:48.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.708][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-08-10 16:04:48.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.753][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.769][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.781][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:48.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.799][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:48.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.816][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-08-10 16:04:48.837][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:48.838][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:48.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:48.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:48.858][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:48.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-08-10 16:04:48.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:48.862][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-08-10 16:04:48.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:48.973][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:48.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:48.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:48.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:48.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:48.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:48.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:48.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:48.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:48.993][private$selectFields]
biodb.TRACE[2024-08-10 16:04:48.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:48.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.020][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-08-10 16:04:49.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.056][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.070][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.075][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-08-10 16:04:49.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.106][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.123][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-08-10 16:04:49.137][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:49.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:49.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:49.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:49.166][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:49.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:49.169][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:49.170][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:49.172][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:49.175][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:49.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:49.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:49.179][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:49.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.239][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:49.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.257][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.273][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:49.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.308][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.319][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:49.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.353][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:49.381][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:49.382][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:49.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:49.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:49.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:49.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:04:49.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:49.400][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:04:49.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:49.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.479][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.495][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:49.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.524][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:49.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.570][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:49.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:49.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:49.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:49.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:49.618][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:49.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:04:49.621][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:49.622][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:04:49.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:49.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.714][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.727][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.731][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:49.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.765][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.783][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-08-10 16:04:49.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.816][private$selectFields]
biodb.TRACE[2024-08-10 16:04:49.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:49.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:49.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.826][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:49.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-08-10 16:04:49.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:49.848][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:49.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:49.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:49.880][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:49.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-08-10 16:04:49.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:49.884][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-08-10 16:04:49.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:49.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:49.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:49.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:49.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:49.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:49.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:49.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:50.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.078][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.094][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-08-10 16:04:50.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.123][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.135][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-08-10 16:04:50.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.169][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.170][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.185][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-08-10 16:04:50.202][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:50.203][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:50.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:50.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:50.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:50.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-08-10 16:04:50.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:50.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-08-10 16:04:50.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:50.832][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:50.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.853][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.871][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-08-10 16:04:50.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.905][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-08-10 16:04:50.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.955][private$selectFields]
biodb.TRACE[2024-08-10 16:04:50.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:50.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:50.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:50.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.973][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:50.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:50.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-08-10 16:04:50.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:50.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:50.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:50.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:50.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:50.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:50.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:50.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:50.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:51.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:51.004][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:51.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-08-10 16:04:51.007][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:51.008][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-08-10 16:04:51.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.108][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:51.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.126][private$selectFields]
biodb.TRACE[2024-08-10 16:04:51.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:51.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:51.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.138][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-08-10 16:04:51.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.171][private$selectFields]
biodb.TRACE[2024-08-10 16:04:51.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:51.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:51.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.183][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-08-10 16:04:51.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.217][private$selectFields]
biodb.TRACE[2024-08-10 16:04:51.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:51.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:51.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.229][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-08-10 16:04:51.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-08-10 16:04:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-08-10 16:04:51.246][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:51.247][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:04:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.264][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:04:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:04:51.274][biodb::testThat]
biodb.INFO [2024-08-10 16:04:51.275][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-08-10 16:04:51.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:04:51.277][biodb::testThat]
biodb.TRACE[2024-08-10 16:04:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:04:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:51.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:51.349][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:51.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:04:51.356][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:51.357][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:04:51.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:51.382][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:51.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:04:51.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:51.385][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:04:51.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:51.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:51.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.523][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.524][private$selectFields]
biodb.TRACE[2024-08-10 16:04:51.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:51.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:51.527][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.531][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.560][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.563][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.574][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.602][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.613][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:51.614][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:51.615][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.619][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.649][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.659][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-08-10 16:04:51.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:51.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:51.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:51.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:51.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:51.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:51.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.883][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.884][private$selectFields]
biodb.TRACE[2024-08-10 16:04:51.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:51.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:51.887][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.888][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.891][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.898][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.925][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.926][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.936][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.940][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.941][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.942][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:51.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:51.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.968][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:51.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.971][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:51.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.975][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:51.976][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:51.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.979][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.979][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:51.980][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:51.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:51.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:51.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:51.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.990][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.991][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:51.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:51.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:51.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:51.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:51.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:51.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:51.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.005][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.008][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.012][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.016][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.023][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:52.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.278][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.279][private$selectFields]
biodb.TRACE[2024-08-10 16:04:52.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:52.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:52.281][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.282][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.286][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.294][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.318][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.321][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.322][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.335][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.338][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.355][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.367][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.371][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.379][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:52.380][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:52.381][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.384][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.384][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.392][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.412][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.416][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.424][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:52.570][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:52.571][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:52.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:52.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:52.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:52.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:04:52.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:52.592][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:04:52.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:52.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:52.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:52.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:52.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:04:52.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:52.640][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:04:52.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:52.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:52.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:52.703][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:52.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:52.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:52.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:52.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:52.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:52.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:52.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.800][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.801][private$selectFields]
biodb.TRACE[2024-08-10 16:04:52.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:52.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:52.804][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.814][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.820][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.821][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.831][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.832][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.834][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.842][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.853][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.856][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.885][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.895][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.896][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:52.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.900][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.907][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.918][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:52.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:52.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.926][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:52.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.929][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:52.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.932][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:52.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:52.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:52.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:52.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.940][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:53.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.178][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.179][private$selectFields]
biodb.TRACE[2024-08-10 16:04:53.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:53.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:53.182][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.183][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.186][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.208][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.215][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.218][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.222][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.223][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.229][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.251][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.258][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.259][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.262][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.266][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.269][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.270][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.274][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.281][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.292][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.293][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.295][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.296][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.303][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.313][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:53.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.553][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.554][private$selectFields]
biodb.TRACE[2024-08-10 16:04:53.554][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:53.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:53.556][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:53.557][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.561][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.568][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.579][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.590][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.593][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.600][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.604][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.633][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.644][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:53.644][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:53.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.649][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.661][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.672][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.679][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.689][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:53.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:53.816][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:53.817][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:53.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:53.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:53.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:53.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:04:53.836][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:53.837][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:04:53.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:53.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:53.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:53.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:53.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:53.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:53.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:53.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:54.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:54.005][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:54.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:04:54.008][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:54.009][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:04:54.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:54.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:54.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:54.070][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:54.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.185][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.186][private$selectFields]
biodb.TRACE[2024-08-10 16:04:54.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:54.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:54.189][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.190][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.194][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.202][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.226][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.254][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.258][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.266][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.289][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.292][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.293][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.300][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.301][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.302][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.306][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.314][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.329][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.336][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.347][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.348][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-08-10 16:04:54.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.556][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.596][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.597][private$selectFields]
biodb.TRACE[2024-08-10 16:04:54.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:54.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:54.599][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.600][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.604][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.625][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.632][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.646][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.679][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.686][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:54.687][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:54.688][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.692][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.693][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.699][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.701][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.717][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.718][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.720][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.728][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-08-10 16:04:54.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:54.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:54.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:54.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:54.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:54.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:54.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.956][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.957][private$selectFields]
biodb.TRACE[2024-08-10 16:04:54.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:54.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:54.960][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:54.960][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:54.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:54.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.964][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:54.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.971][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:54.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:54.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:54.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:54.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.986][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:54.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.993][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.994][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:54.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:54.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:54.999][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.004][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.007][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.015][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.036][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.037][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.040][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.047][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:55.048][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:55.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.052][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.059][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.059][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.070][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.088][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:55.220][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:55.221][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:55.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:55.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:55.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:55.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-08-10 16:04:55.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:55.246][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-08-10 16:04:55.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:55.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:55.272][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:55.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-08-10 16:04:55.274][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:55.275][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-08-10 16:04:55.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:55.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:55.317][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:55.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:55.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.426][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.427][private$selectFields]
biodb.TRACE[2024-08-10 16:04:55.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:55.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:55.430][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.431][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.434][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.441][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.463][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.466][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.473][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.474][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.477][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.487][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.512][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.519][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.520][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.523][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:55.524][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:55.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.528][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.536][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.554][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.554][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.557][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.562][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.564][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-08-10 16:04:55.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:55.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:55.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:55.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:55.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:55.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:55.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.799][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.800][private$selectFields]
biodb.TRACE[2024-08-10 16:04:55.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:55.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:55.803][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.807][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.836][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.840][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.847][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.848][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.850][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.854][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.861][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.875][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.883][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.886][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:55.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.897][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.898][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:55.899][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.902][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.909][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.910][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:55.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:55.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.930][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:55.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.935][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:55.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:55.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:55.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:55.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.942][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:04:56.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.190][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.190][private$selectFields]
biodb.TRACE[2024-08-10 16:04:56.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:56.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:56.193][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.198][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.205][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.209][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.226][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.237][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.238][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.241][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.250][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.257][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.271][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.278][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.279][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.282][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.289][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.290][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.292][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.293][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:56.293][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:56.294][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.298][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.305][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.323][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.330][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.333][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:56.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:56.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:56.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:56.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:56.478][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:56.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-08-10 16:04:56.481][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:56.482][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-08-10 16:04:56.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:56.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:56.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:56.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:56.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-08-10 16:04:56.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:56.565][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-08-10 16:04:56.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:56.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:56.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:56.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:56.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:56.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:56.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:56.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:56.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:56.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:56.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.744][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.745][private$selectFields]
biodb.TRACE[2024-08-10 16:04:56.746][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:56.747][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:56.748][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.749][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.752][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.753][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.760][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.760][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.795][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.796][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.799][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.802][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.823][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.825][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.833][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.843][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.844][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.847][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.848][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:56.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.852][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.853][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.865][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.887][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.890][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:56.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:56.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:56.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:56.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.897][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:56.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:56.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:57.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.145][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.146][private$selectFields]
biodb.TRACE[2024-08-10 16:04:57.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:57.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:57.149][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.153][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.182][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.185][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.192][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.193][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.196][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.199][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.206][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.206][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.228][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.231][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.238][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.239][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.242][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.243][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.244][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.247][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.286][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.287][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:57.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.535][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.536][private$selectFields]
biodb.TRACE[2024-08-10 16:04:57.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:57.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:57.539][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:57.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.543][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.550][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.572][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.576][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.586][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.590][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:57.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.619][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.630][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.631][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:57.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.633][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:57.634][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:57.635][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.639][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.652][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.664][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.667][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.668][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.670][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.675][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:04:57.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:57.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:04:57.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:57.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:57.825][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:57.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-08-10 16:04:57.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:57.829][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-08-10 16:04:57.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:57.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:57.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:57.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:57.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:57.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:57.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:57.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:57.999][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:58.000][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-08-10 16:04:58.001][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:58.002][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-08-10 16:04:58.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:58.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:58.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:58.064][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:58.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.168][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.169][private$selectFields]
biodb.TRACE[2024-08-10 16:04:58.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:58.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:58.171][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.176][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.178][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.183][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.204][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.215][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.216][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.219][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.222][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.229][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.240][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.247][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.251][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.262][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.263][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.265][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.266][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.267][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.276][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.279][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.284][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.305][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.309][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.316][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-08-10 16:04:58.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.564][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.565][private$selectFields]
biodb.TRACE[2024-08-10 16:04:58.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:58.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:58.568][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.569][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.572][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.604][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.609][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.611][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.612][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.615][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.618][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.625][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.646][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.647][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.649][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.650][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.657][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.658][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.661][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:58.662][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:58.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.666][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.674][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.683][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.692][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.702][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:58.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-08-10 16:04:58.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:58.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:58.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:58.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:58.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:58.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:58.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:58.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.939][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.940][private$selectFields]
biodb.TRACE[2024-08-10 16:04:58.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:58.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:58.942][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:58.943][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.947][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:58.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:58.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.957][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:58.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:58.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.961][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.962][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:58.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:58.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.969][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:58.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:58.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.976][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.977][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:58.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.980][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:58.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:58.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:58.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:58.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.987][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.988][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:58.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.990][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.990][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:58.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.994][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:58.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:58.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:58.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:58.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:58.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.001][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.023][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.027][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.034][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:04:59.035][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:04:59.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.037][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:59.038][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:04:59.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.043][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.068][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.069][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.072][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.075][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.076][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.079][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:59.212][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:04:59.213][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:04:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:59.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:04:59.276][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:59.279][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:59.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:04:59.282][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:59.283][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:04:59.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:04:59.288][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:04:59.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:04:59.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:04:59.292][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:04:59.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:59.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:59.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:59.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:04:59.353][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:04:59.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.456][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.457][private$selectFields]
biodb.TRACE[2024-08-10 16:04:59.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:59.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:59.460][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.461][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.464][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.471][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.482][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.483][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.496][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.507][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.528][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.536][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.539][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.546][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.547][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.552][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.559][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.562][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.584][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.588][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.589][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.591][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:04:59.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:04:59.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:04:59.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:04:59.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:04:59.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:04:59.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:04:59.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:04:59.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:04:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.870][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.871][private$selectFields]
biodb.TRACE[2024-08-10 16:04:59.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:04:59.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:04:59.874][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.879][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.909][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.913][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.921][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.925][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.926][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.944][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.954][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.955][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.956][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:04:59.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.959][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:04:59.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:04:59.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.963][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:04:59.964][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:04:59.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.966][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.967][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:04:59.968][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:04:59.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:04:59.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.972][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:04:59.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:04:59.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:04:59.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:04:59.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:04:59.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:04:59.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:04:59.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:04:59.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:04:59.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:04:59.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:04:59.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:04:59.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:04:59.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.001][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.004][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.017][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:05:00.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.252][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.252][private$selectFields]
biodb.TRACE[2024-08-10 16:05:00.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:00.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:00.255][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.256][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.260][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.267][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.294][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.298][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.305][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.308][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.315][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.337][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.347][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:00.348][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:00.349][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.353][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.360][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.374][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.377][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.381][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.388][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:05:00.515][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:00.516][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:05:00.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:05:00.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:00.533][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:00.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:05:00.535][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:00.536][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:05:00.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:00.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:00.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:00.618][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:05:00.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:00.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:00.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:00.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:00.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:00.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.675][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.714][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.715][private$selectFields]
biodb.TRACE[2024-08-10 16:05:00.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:00.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:00.718][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.719][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.722][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.749][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.751][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.755][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.762][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.766][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.773][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.788][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.793][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.795][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.796][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.799][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.806][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.807][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:00.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.812][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.833][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.834][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.841][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.842][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.845][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.852][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:00.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:00.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:00.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:00.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:00.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:00.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.960][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:00.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:00.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:00.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:00.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:00.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:00.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:00.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:00.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.092][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.093][private$selectFields]
biodb.TRACE[2024-08-10 16:05:01.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:01.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:01.096][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.097][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.100][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.129][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.133][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.171][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.189][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:01.190][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:01.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.194][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.202][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.219][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.220][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.230][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:01.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.461][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.462][private$selectFields]
biodb.TRACE[2024-08-10 16:05:01.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:01.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:01.464][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.469][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.483][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.497][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.500][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.501][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.505][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.512][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.544][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.551][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:01.552][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:01.553][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.557][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.564][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.582][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.585][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.590][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.593][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:05:01.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:01.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:05:01.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:05:01.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:01.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:01.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:05:01.745][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:01.747][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:05:01.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:01.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:01.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:01.808][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:05:01.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:01.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:01.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:01.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:01.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:01.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:01.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.905][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.906][private$selectFields]
biodb.TRACE[2024-08-10 16:05:01.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:01.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:01.908][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:01.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.912][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.913][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.920][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.926][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.930][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.934][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.941][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.945][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.946][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.948][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.952][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:01.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:01.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.956][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:01.957][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:01.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:01.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:01.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:01.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:01.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:01.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:01.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.973][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:01.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.976][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.977][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.980][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:01.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.984][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.984][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:01.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.988][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:01.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:01.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:01.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:01.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:01.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:01.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.001][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.002][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.007][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.027][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.034][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.035][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.046][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:02.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-08-10 16:05:02.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.286][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.287][private$selectFields]
biodb.TRACE[2024-08-10 16:05:02.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:02.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:02.289][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.290][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.294][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.301][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.321][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.322][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.333][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.336][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.361][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.365][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.375][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:02.376][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:02.377][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.381][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.388][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.399][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.401][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.405][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.406][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.408][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.409][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.412][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.413][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.417][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:02.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-08-10 16:05:02.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.644][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.645][private$selectFields]
biodb.TRACE[2024-08-10 16:05:02.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:02.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:02.648][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:02.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.652][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.659][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.673][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.681][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.685][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.696][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.703][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:02.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.724][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.730][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.735][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:02.736][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:02.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.740][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.747][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.769][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.776][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:02.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:02.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:02.909][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:02.909][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:05:02.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:05:02.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:02.930][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:02.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-08-10 16:05:02.932][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:02.933][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-08-10 16:05:02.936][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:02.939][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:02.940][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-08-10 16:05:02.941][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:02.943][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-08-10 16:05:02.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:02.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:02.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:02.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:02.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:02.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:02.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:02.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:02.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:03.005][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:05:03.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:03.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:03.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:03.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:03.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:03.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:03.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.109][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.110][private$selectFields]
biodb.TRACE[2024-08-10 16:05:03.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:03.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:03.113][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.123][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.130][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.141][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.148][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.152][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.155][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.163][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.163][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.170][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.177][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.191][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.202][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.205][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.206][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.209][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.210][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.212][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.213][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.218][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.231][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.239][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.250][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.257][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:05:03.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:03.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:03.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:03.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:03.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:03.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:03.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.505][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.506][private$selectFields]
biodb.TRACE[2024-08-10 16:05:03.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:03.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:03.508][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.513][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.514][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.520][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.532][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.542][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.543][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.546][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.553][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.554][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.556][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.560][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.567][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.573][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.588][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.589][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.590][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.592][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.600][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.600][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.603][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.604][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.605][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.609][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.616][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.630][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.642][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.644][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.645][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.648][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-08-10 16:05:03.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:03.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:03.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:03.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:03.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:03.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:03.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.924][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.925][private$selectFields]
biodb.TRACE[2024-08-10 16:05:03.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:03.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:03.928][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:03.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.933][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.936][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:03.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.941][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:03.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:03.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:03.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:03.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.948][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:03.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:03.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:03.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:03.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.968][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:03.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:03.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:03.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:03.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.976][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.977][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.980][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:03.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:03.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.984][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:03.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:03.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:03.987][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:03.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.007][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.025][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.030][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.033][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.034][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.041][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.042][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.045][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:04.046][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:04.047][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.051][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.058][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.058][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.061][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.070][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.088][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:05:04.216][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:04.217][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:05:04.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:05:04.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:04.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:04.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-08-10 16:05:04.236][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:04.237][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-08-10 16:05:04.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:04.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:04.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:04.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:04.305][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:05:04.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:04.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.408][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.409][private$selectFields]
biodb.TRACE[2024-08-10 16:05:04.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:04.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:04.412][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.416][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.424][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.426][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.445][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.449][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.456][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.457][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.463][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.506][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.507][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.511][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.514][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.518][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.551][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:04.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:04.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:04.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:04.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:04.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:04.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:04.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:04.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:04.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.799][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.800][private$selectFields]
biodb.TRACE[2024-08-10 16:05:04.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:04.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:04.803][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:04.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.807][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.828][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.836][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.840][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.853][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.860][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:04.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.888][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.892][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.899][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.900][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:04.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.903][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:04.904][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:04.904][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:04.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.926][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:04.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:04.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:04.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.936][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:04.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:04.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:04.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:04.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.943][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:04.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:04.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:04.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:05.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.181][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.182][private$selectFields]
biodb.TRACE[2024-08-10 16:05:05.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:05.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:05.185][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.186][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.189][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.206][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.217][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.221][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.226][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.228][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.229][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.231][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.232][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.235][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.243][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.264][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.268][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.270][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.275][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.276][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.279][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:05.280][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:05.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.284][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.309][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.313][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.317][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.320][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-08-10 16:05:05.453][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:05.454][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:05:05.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:05:05.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-08-10 16:05:05.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:05:05.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-08-10 16:05:05.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:05:05.473][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-08-10 16:05:05.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:05.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:05.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:05:05.535][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:05:05.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.640][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.641][private$selectFields]
biodb.TRACE[2024-08-10 16:05:05.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:05.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:05.643][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.648][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.677][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.680][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.694][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.695][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.700][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.701][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.707][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.708][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.720][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.725][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.729][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.733][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.740][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.741][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:05.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.743][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.744][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:05.745][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.748][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.749][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.750][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.766][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.767][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.777][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.778][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.779][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.780][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.787][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.787][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-08-10 16:05:05.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:05.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:05.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:05.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:05.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:05.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:05.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:05.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:05.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:05.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:05.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:05.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:05.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:05.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.035][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:06.036][private$selectFields]
biodb.TRACE[2024-08-10 16:05:06.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:06.038][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:06.039][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:06.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.043][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.061][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.062][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.072][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.073][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.075][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.083][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.084][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.086][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.090][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.097][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.118][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.119][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.122][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.129][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.130][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.133][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:06.134][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:06.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.138][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.155][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.156][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.163][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.167][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.174][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-08-10 16:05:06.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:05:06.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:06.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:06.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:06.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:06.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:06.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:05:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.408][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:06.409][private$selectFields]
biodb.TRACE[2024-08-10 16:05:06.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:05:06.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:05:06.412][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-08-10 16:05:06.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.416][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.423][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.426][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.445][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.448][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.456][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.456][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.463][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.469][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.472][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-08-10 16:05:06.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.491][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:05:06.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.505][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:06.506][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-08-10 16:05:06.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.511][ef$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.546][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.549][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.554][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-08-10 16:05:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:05:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:05:06.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-08-10 16:05:06.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-08-10 16:05:06.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-08-10 16:05:06.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:05:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:05:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:05:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:05:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:05:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:05:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:05:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-08-10 16:05:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:05:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:05:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-08-10 16:05:06.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-08-10 16:05:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-08-10 16:05:06.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:05:06.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:05:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:05:06.693][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:05:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:05:06.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:05:06.698][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:05:06.700][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-08-10 16:05:06.701][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-08-10 16:05:06.701][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:05:06.702][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:05:06.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:05:06.704][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:05:06.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:05:06.705][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:05:06.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1396 ]
>
> proc.time()
user system elapsed
87.138 3.717 210.560
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)