Britta Velten
| Snapshot Date: 2024-11-06 13:40 -0500 (Wed, 06 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_20 |
| git_last_commit: 04d5a90 |
| git_last_commit_date: 2024-10-29 10:33:50 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-07 12:05 -0500 (Thu, 07 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4765 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 899/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.22.0 (landing page) Britta Velten
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.22.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings graper_1.22.0.tar.gz |
| StartedAt: 2024-11-07 01:45:52 -0500 (Thu, 07 Nov 2024) |
| EndedAt: 2024-11-07 01:47:29 -0500 (Thu, 07 Nov 2024) |
| EllapsedTime: 96.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings graper_1.22.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.22.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.20-bioc/R/library/graper/libs/x64/graper.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'F:/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log'
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/BH/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:15,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
F:/biocbuild/bbs-3.20-bioc/R/library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-844.657
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.451
ELB improved by 266.206
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.029
ELB improved by 60.422
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.531
ELB improved by 41.4982
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.878
ELB improved by 18.653
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.386
ELB improved by 7.49251
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.586
ELB improved by 3.79943
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.914
ELB improved by 2.67224
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.545
ELB improved by 2.36877
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.233
ELB improved by 2.31243
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.912
ELB improved by 2.32021
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.607
ELB improved by 2.30543
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.409
ELB improved by 2.19788
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.452
ELB improved by 1.95676
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.843
ELB improved by 1.60927
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.601
ELB improved by 1.24233
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.662
ELB improved by 0.938867
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.931
ELB improved by 0.730936
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.325
ELB improved by 0.605854
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.791
ELB improved by 0.533704
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.303
ELB improved by 0.488509
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.845
ELB improved by 0.457743
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.406
ELB improved by 0.438796
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.976
ELB improved by 0.430576
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.545
ELB improved by 0.430477
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.11
ELB improved by 0.435338
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.668
ELB improved by 0.442413
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.218
ELB improved by 0.449637
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.762
ELB improved by 0.455621
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.303
ELB improved by 0.45956
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.842
ELB improved by 0.461115
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.381
ELB improved by 0.460252
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.924
ELB improved by 0.457053
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.473
ELB improved by 0.451559
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.029
ELB improved by 0.443642
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.596
ELB improved by 0.432954
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.177
ELB improved by 0.418965
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.776
ELB improved by 0.401105
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.397
ELB improved by 0.378996
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.044
ELB improved by 0.352707
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.721
ELB improved by 0.322934
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.43
ELB improved by 0.291003
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.172
ELB improved by 0.258658
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.944
ELB improved by 0.227677
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.745
ELB improved by 0.199469
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.57
ELB improved by 0.174829
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.416
ELB improved by 0.153908
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.28
ELB improved by 0.136372
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.158
ELB improved by 0.121628
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.049
ELB improved by 0.109045
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.951
ELB improved by 0.0980924
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.862
ELB improved by 0.0883948
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.783
ELB improved by 0.0797198
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.711
ELB improved by 0.0719358
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.646
ELB improved by 0.0649683
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.587
ELB improved by 0.0587678
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.534
ELB improved by 0.0532931
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.485
ELB improved by 0.0485036
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.441
ELB improved by 0.0443577
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.4
ELB improved by 0.0408145
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.362
ELB improved by 0.037837
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.327
ELB improved by 0.035398
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.293
ELB improved by 0.0334882
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.261
ELB improved by 0.0321295
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.23
ELB improved by 0.0313978
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.198
ELB improved by 0.031463
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.166
ELB improved by 0.0326684
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.13
ELB improved by 0.0356928
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.088
ELB improved by 0.0418912
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.034
ELB improved by 0.0540026
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.957
ELB improved by 0.0774356
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.835
ELB improved by 0.121598
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.638
ELB improved by 0.197249
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.336
ELB improved by 0.301745
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.945
ELB improved by 0.390784
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.567
ELB improved by 0.377809
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.296
ELB improved by 0.271719
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.117
ELB improved by 0.178902
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.983
ELB improved by 0.134295
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.856
ELB improved by 0.126833
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.708
ELB improved by 0.148107
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.522
ELB improved by 0.185883
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.318
ELB improved by 0.203787
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.143
ELB improved by 0.174805
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.018
ELB improved by 0.125546
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.932
ELB improved by 0.0856022
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.872
ELB improved by 0.059538
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.829
ELB improved by 0.043277
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.796
ELB improved by 0.0330506
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.77
ELB improved by 0.0264836
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.747
ELB improved by 0.0221877
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.728
ELB improved by 0.0193653
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.71
ELB improved by 0.0175649
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.694
ELB improved by 0.0165486
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.678
ELB improved by 0.016229
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.661
ELB improved by 0.0166525
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.643
ELB improved by 0.018026
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.622
ELB improved by 0.0207971
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.596
ELB improved by 0.0258131
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.562
ELB improved by 0.0345582
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.513
ELB improved by 0.0492796
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.441
ELB improved by 0.0720669
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.34
ELB improved by 0.100744
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.217
ELB improved by 0.122511
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.098
ELB improved by 0.119603
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.005
ELB improved by 0.0922848
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.945
ELB improved by 0.0601561
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.908
ELB improved by 0.0370007
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.885
ELB improved by 0.0234181
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.869
ELB improved by 0.0157598
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.858
ELB improved by 0.01128
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.849
ELB improved by 0.00852542
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.573
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.203
ELB improved by 293.37
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.761
ELB improved by 53.4421
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.21
ELB improved by 31.5514
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.697
ELB improved by 14.5129
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.113
ELB improved by 6.58335
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.732
ELB improved by 4.38115
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.853
ELB improved by 3.87909
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.991
ELB improved by 3.86244
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.075
ELB improved by 3.91601
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.362
ELB improved by 3.71222
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.225
ELB improved by 3.13729
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.831
ELB improved by 2.39401
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.068
ELB improved by 1.76301
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.715
ELB improved by 1.35277
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.584
ELB improved by 1.13138
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.552
ELB improved by 1.03153
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.553
ELB improved by 0.99891
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.554
ELB improved by 0.999486
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.54
ELB improved by 1.01369
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.509
ELB improved by 1.03108
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.462
ELB improved by 1.04749
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.399
ELB improved by 1.06288
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.32
ELB improved by 1.07915
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.222
ELB improved by 1.09797
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.102
ELB improved by 1.11936
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.961
ELB improved by 1.14091
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.804
ELB improved by 1.15755
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.642
ELB improved by 1.16192
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.497
ELB improved by 1.14534
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.398
ELB improved by 1.09911
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.381
ELB improved by 1.0165
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.484
ELB improved by 0.8967
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.734
ELB improved by 0.750122
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.137
ELB improved by 0.597677
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.676
ELB improved by 0.460539
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.325
ELB improved by 0.350491
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.057
ELB improved by 0.26899
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.845
ELB improved by 0.211631
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.672
ELB improved by 0.172527
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.526
ELB improved by 0.146719
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.395
ELB improved by 0.131041
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.27
ELB improved by 0.124463
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.141
ELB improved by 0.128963
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.989
ELB improved by 0.152487
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.772
ELB improved by 0.21706
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.405
ELB improved by 0.366826
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.811
ELB improved by 0.594098
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.115
ELB improved by 0.695942
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.516
ELB improved by 0.599201
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.049
ELB improved by 0.466414
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.657
ELB improved by 0.392495
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.257
ELB improved by 0.399872
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.758
ELB improved by 0.499104
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.125
ELB improved by 0.632719
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.49
ELB improved by 0.634947
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.997
ELB improved by 0.493296
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.656
ELB improved by 0.340658
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.434
ELB improved by 0.222435
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.292
ELB improved by 0.141275
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.201
ELB improved by 0.0910234
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.14
ELB improved by 0.0614025
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.096
ELB improved by 0.0440175
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.062
ELB improved by 0.0336255
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.035
ELB improved by 0.0272503
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.012
ELB improved by 0.0232565
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.991
ELB improved by 0.0207647
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.972
ELB improved by 0.0193286
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.953
ELB improved by 0.0187742
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.934
ELB improved by 0.0191427
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.913
ELB improved by 0.020721
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.889
ELB improved by 0.0241916
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.858
ELB improved by 0.0310082
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.814
ELB improved by 0.0442525
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.743
ELB improved by 0.0703928
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.622
ELB improved by 0.121512
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.412
ELB improved by 0.209674
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.104
ELB improved by 0.307661
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.775
ELB improved by 0.329234
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.509
ELB improved by 0.265695
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.326
ELB improved by 0.182973
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.214
ELB improved by 0.112089
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.151
ELB improved by 0.0634928
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.115
ELB improved by 0.035712
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.094
ELB improved by 0.0211865
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.08
ELB improved by 0.0136627
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.071
ELB improved by 0.00962431
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-913.255
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-562.824
ELB improved by 350.431
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.524
ELB improved by 55.3008
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.327
ELB improved by 28.1966
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.531
ELB improved by 10.796
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.309
ELB improved by 5.2215
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.431
ELB improved by 3.87889
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.821
ELB improved by 3.60952
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.17
ELB improved by 3.65123
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.323
ELB improved by 3.8463
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.252
ELB improved by 4.07171
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.156
ELB improved by 4.09569
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.474
ELB improved by 3.68189
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.586
ELB improved by 2.88857
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.532
ELB improved by 2.05414
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.099
ELB improved by 1.4321
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.051
ELB improved by 1.04878
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.221
ELB improved by 0.829989
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.515
ELB improved by 0.705371
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.884
ELB improved by 0.630866
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.302
ELB improved by 0.582682
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.752
ELB improved by 0.549442
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.225
ELB improved by 0.526889
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.711
ELB improved by 0.514579
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.198
ELB improved by 0.51318
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.677
ELB improved by 0.520955
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.146
ELB improved by 0.530791
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.611
ELB improved by 0.534718
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.077
ELB improved by 0.533853
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.541
ELB improved by 0.535886
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.996
ELB improved by 0.54498
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.436
ELB improved by 0.560166
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.858
ELB improved by 0.578057
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.264
ELB improved by 0.594195
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.66
ELB improved by 0.603552
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.059
ELB improved by 0.601337
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.475
ELB improved by 0.584323
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.923
ELB improved by 0.552213
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.414
ELB improved by 0.508184
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.956
ELB improved by 0.458014
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.548
ELB improved by 0.408328
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.183
ELB improved by 0.365179
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.85
ELB improved by 0.332779
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.541
ELB improved by 0.309408
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.261
ELB improved by 0.279847
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.036
ELB improved by 0.224365
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.882
ELB improved by 0.154677
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.78
ELB improved by 0.101619
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.709
ELB improved by 0.0711823
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.655
ELB improved by 0.0541057
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.611
ELB improved by 0.043618
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.575
ELB improved by 0.0367348
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.542
ELB improved by 0.0321662
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.513
ELB improved by 0.0293085
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.485
ELB improved by 0.0279238
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.457
ELB improved by 0.0280722
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.427
ELB improved by 0.0301601
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.392
ELB improved by 0.0350674
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.348
ELB improved by 0.0442236
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.289
ELB improved by 0.0590382
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.21
ELB improved by 0.0782266
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.117
ELB improved by 0.0932664
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.025
ELB improved by 0.0916153
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.952
ELB improved by 0.0731364
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.901
ELB improved by 0.0515519
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.865
ELB improved by 0.0361531
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.837
ELB improved by 0.0271863
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.815
ELB improved by 0.0222547
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.796
ELB improved by 0.0195713
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.777
ELB improved by 0.0181543
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.76
ELB improved by 0.0174548
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.743
ELB improved by 0.0170976
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.726
ELB improved by 0.0167603
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.71
ELB improved by 0.0161497
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.695
ELB improved by 0.0150544
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.682
ELB improved by 0.0134279
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.67
ELB improved by 0.011425
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.661
ELB improved by 0.00933272
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-898.392
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-571.772
ELB improved by 326.62
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.168
ELB improved by 60.6038
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.111
ELB improved by 36.0572
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.949
ELB improved by 15.1614
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.465
ELB improved by 6.48405
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.528
ELB improved by 3.93717
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.25
ELB improved by 3.27825
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.025
ELB improved by 3.22481
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.528
ELB improved by 3.49725
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.527
ELB improved by 4.00105
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.948
ELB improved by 4.57877
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.095
ELB improved by 4.85326
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.679
ELB improved by 4.41583
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.311
ELB improved by 3.36756
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.049
ELB improved by 2.26275
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.569
ELB improved by 1.47947
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.532
ELB improved by 1.03742
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.722
ELB improved by 0.810222
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.03
ELB improved by 0.691564
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.407
ELB improved by 0.622714
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.832
ELB improved by 0.57496
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.298
ELB improved by 0.534755
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.801
ELB improved by 0.496148
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.344
ELB improved by 0.457175
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.926
ELB improved by 0.417932
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.547
ELB improved by 0.379382
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.204
ELB improved by 0.342641
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.896
ELB improved by 0.308594
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.618
ELB improved by 0.277781
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.368
ELB improved by 0.250407
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.141
ELB improved by 0.226429
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.935
ELB improved by 0.205644
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.748
ELB improved by 0.187766
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.575
ELB improved by 0.172488
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.416
ELB improved by 0.159526
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.267
ELB improved by 0.148644
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.127
ELB improved by 0.139689
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.995
ELB improved by 0.132616
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.867
ELB improved by 0.127546
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.742
ELB improved by 0.124837
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.617
ELB improved by 0.125164
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.488
ELB improved by 0.129476
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.349
ELB improved by 0.138372
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.199
ELB improved by 0.150185
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.04
ELB improved by 0.158706
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.884
ELB improved by 0.156174
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.742
ELB improved by 0.142261
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.618
ELB improved by 0.124193
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.51
ELB improved by 0.107603
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.416
ELB improved by 0.0938141
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.334
ELB improved by 0.0824057
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.261
ELB improved by 0.0728198
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.196
ELB improved by 0.0646575
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.139
ELB improved by 0.0576387
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.087
ELB improved by 0.051553
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.041
ELB improved by 0.0462364
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404
ELB improved by 0.0415594
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.962
ELB improved by 0.0374195
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.928
ELB improved by 0.0337354
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.898
ELB improved by 0.0304424
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.87
ELB improved by 0.0274889
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.846
ELB improved by 0.0248337
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.823
ELB improved by 0.0224441
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.803
ELB improved by 0.0202939
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.784
ELB improved by 0.0183617
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.768
ELB improved by 0.0166294
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.753
ELB improved by 0.0150811
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.739
ELB improved by 0.0137016
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.727
ELB improved by 0.0124765
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.715
ELB improved by 0.0113917
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.705
ELB improved by 0.0104332
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.695
ELB improved by 0.00958769
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.65 0.28 2.87
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.08 | 0.02 | 0.09 | |
| getPIPs | 0.05 | 0.03 | 0.08 | |
| graper | 0.11 | 0.00 | 0.11 | |
| makeExampleData | 0.02 | 0.00 | 0.01 | |
| makeExampleDataWithUnequalGroups | 0.01 | 0.01 | 0.03 | |
| plotELBO | 0.25 | 0.04 | 0.28 | |
| plotGroupPenalties | 1.14 | 0.03 | 1.18 | |
| plotPosterior | 0.71 | 0.01 | 0.71 | |
| predict.graper | 2.06 | 0.00 | 2.07 | |
| print.graper | 0.04 | 0.02 | 0.06 | |