Britta Velten
| Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 7b45fcc |
| git_last_commit_date: 2024-04-30 11:11:42 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-06 11:38 -0400 (Sat, 06 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 883/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.21.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings graper_1.21.0.tar.gz |
| StartedAt: 2024-07-05 23:26:37 -0400 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 23:27:58 -0400 (Fri, 05 Jul 2024) |
| EllapsedTime: 81.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings graper_1.21.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
libs 6.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
‘/home/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
/home/biocbuild/bbs-3.20-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.20-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.824
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-583.393
ELB improved by 289.431
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-529.052
ELB improved by 54.3414
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-490.798
ELB improved by 38.2538
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.482
ELB improved by 17.316
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.327
ELB improved by 6.15508
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.192
ELB improved by 3.13513
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.726
ELB improved by 2.46578
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.354
ELB improved by 2.37206
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.9
ELB improved by 2.45423
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.318
ELB improved by 2.58226
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.648
ELB improved by 2.66968
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.022
ELB improved by 2.6259
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.633
ELB improved by 2.38892
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.652
ELB improved by 1.98104
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.142
ELB improved by 1.50952
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.054
ELB improved by 1.08889
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.281
ELB improved by 0.772281
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.725
ELB improved by 0.556169
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.31
ELB improved by 0.415208
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.986
ELB improved by 0.324407
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.72
ELB improved by 0.265258
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.495
ELB improved by 0.225503
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.297
ELB improved by 0.197598
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.12
ELB improved by 0.177104
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.959
ELB improved by 0.161437
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.81
ELB improved by 0.149061
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.671
ELB improved by 0.139027
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.54
ELB improved by 0.130723
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.416
ELB improved by 0.123734
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.298
ELB improved by 0.11777
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.186
ELB improved by 0.112619
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.078
ELB improved by 0.108126
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.973
ELB improved by 0.104175
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.873
ELB improved by 0.10068
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.775
ELB improved by 0.0975774
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.68
ELB improved by 0.0948233
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.588
ELB improved by 0.0923901
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.498
ELB improved by 0.0902638
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.409
ELB improved by 0.088443
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.322
ELB improved by 0.0869376
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.236
ELB improved by 0.0857694
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.152
ELB improved by 0.0849721
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.067
ELB improved by 0.0845934
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.982
ELB improved by 0.084699
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.897
ELB improved by 0.0853781
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.81
ELB improved by 0.0867537
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.721
ELB improved by 0.0889985
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.629
ELB improved by 0.0923602
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.532
ELB improved by 0.0972022
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.427
ELB improved by 0.104068
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.314
ELB improved by 0.113777
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.186
ELB improved by 0.127555
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.039
ELB improved by 0.147131
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.864
ELB improved by 0.174555
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.653
ELB improved by 0.211116
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.398
ELB improved by 0.254854
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.099
ELB improved by 0.299072
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.761
ELB improved by 0.33804
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.384
ELB improved by 0.377179
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.95
ELB improved by 0.434181
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.418
ELB improved by 0.532052
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.746
ELB improved by 0.67172
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.987
ELB improved by 0.758797
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.285
ELB improved by 0.7028
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.694
ELB improved by 0.590329
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.21
ELB improved by 0.483972
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.823
ELB improved by 0.387025
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.52
ELB improved by 0.303584
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.283
ELB improved by 0.237068
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.096
ELB improved by 0.186219
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.949
ELB improved by 0.147629
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.831
ELB improved by 0.117981
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.736
ELB improved by 0.0949545
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.659
ELB improved by 0.0771364
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.595
ELB improved by 0.0635571
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.542
ELB improved by 0.0533812
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.496
ELB improved by 0.0458487
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.456
ELB improved by 0.0403114
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.419
ELB improved by 0.0362537
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.386
ELB improved by 0.0332795
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.355
ELB improved by 0.0310833
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.326
ELB improved by 0.0294214
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.298
ELB improved by 0.0280903
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.271
ELB improved by 0.0269156
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.245
ELB improved by 0.0257526
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.22
ELB improved by 0.024496
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.197
ELB improved by 0.0230912
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.176
ELB improved by 0.0215392
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.156
ELB improved by 0.0198882
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.138
ELB improved by 0.0182129
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.121
ELB improved by 0.0165907
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.106
ELB improved by 0.0150823
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.092
ELB improved by 0.0137245
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.08
ELB improved by 0.0125308
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.068
ELB improved by 0.0114979
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.058
ELB improved by 0.0106122
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.048
ELB improved by 0.00985623
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-883.406
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-567.509
ELB improved by 315.897
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-508.688
ELB improved by 58.8211
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.167
ELB improved by 33.5205
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.597
ELB improved by 13.5706
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.456
ELB improved by 5.14057
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.771
ELB improved by 2.68474
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.018
ELB improved by 1.75309
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.695
ELB improved by 1.32356
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.587
ELB improved by 1.10766
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.604
ELB improved by 0.982698
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.707
ELB improved by 0.897527
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.876
ELB improved by 0.83087
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.102
ELB improved by 0.773851
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.379
ELB improved by 0.722934
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.702
ELB improved by 0.67687
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.067
ELB improved by 0.635257
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.469
ELB improved by 0.597848
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.905
ELB improved by 0.564251
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.371
ELB improved by 0.533886
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.865
ELB improved by 0.506063
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.385
ELB improved by 0.480094
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.929
ELB improved by 0.455356
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.498
ELB improved by 0.431257
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.091
ELB improved by 0.407164
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.709
ELB improved by 0.3824
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.352
ELB improved by 0.356373
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.023
ELB improved by 0.328781
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.724
ELB improved by 0.299757
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.454
ELB improved by 0.269851
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.214
ELB improved by 0.239876
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.003
ELB improved by 0.210738
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.82
ELB improved by 0.183293
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.662
ELB improved by 0.158249
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.526
ELB improved by 0.136074
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.409
ELB improved by 0.116963
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.308
ELB improved by 0.100849
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.22
ELB improved by 0.0874781
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.144
ELB improved by 0.0764951
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.076
ELB improved by 0.0675198
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.016
ELB improved by 0.0601957
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.962
ELB improved by 0.0542128
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.913
ELB improved by 0.0493145
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.867
ELB improved by 0.0452942
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.825
ELB improved by 0.0419888
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.786
ELB improved by 0.0392708
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.749
ELB improved by 0.0370414
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.714
ELB improved by 0.0352246
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.68
ELB improved by 0.0337625
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.647
ELB improved by 0.0326114
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.616
ELB improved by 0.0317394
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.585
ELB improved by 0.0311238
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.554
ELB improved by 0.0307501
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.523
ELB improved by 0.0306103
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.492
ELB improved by 0.0307025
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.461
ELB improved by 0.0310307
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.43
ELB improved by 0.0316044
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.397
ELB improved by 0.0324389
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.364
ELB improved by 0.0335557
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.329
ELB improved by 0.0349831
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.292
ELB improved by 0.0367575
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.253
ELB improved by 0.0389244
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.212
ELB improved by 0.0415404
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.167
ELB improved by 0.0446754
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.119
ELB improved by 0.0484156
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.066
ELB improved by 0.0528675
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.008
ELB improved by 0.0581629
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.943
ELB improved by 0.0644658
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.871
ELB improved by 0.0719814
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.79
ELB improved by 0.0809687
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.698
ELB improved by 0.0917572
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.594
ELB improved by 0.104769
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.473
ELB improved by 0.120551
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.333
ELB improved by 0.139806
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.17
ELB improved by 0.163436
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.977
ELB improved by 0.192565
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.749
ELB improved by 0.22852
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.476
ELB improved by 0.272697
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.15
ELB improved by 0.326234
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.76
ELB improved by 0.38941
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.3
ELB improved by 0.460856
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.763
ELB improved by 0.536841
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.152
ELB improved by 0.611026
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.477
ELB improved by 0.674923
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.757
ELB improved by 0.719232
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.021
ELB improved by 0.736235
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.298
ELB improved by 0.722935
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.615
ELB improved by 0.683401
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.987
ELB improved by 0.628047
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.418
ELB improved by 0.568935
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.905
ELB improved by 0.513092
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.446
ELB improved by 0.458358
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.049
ELB improved by 0.39734
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.72
ELB improved by 0.328649
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.46
ELB improved by 0.260906
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.256
ELB improved by 0.203747
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.095
ELB improved by 0.160863
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.964
ELB improved by 0.131273
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.851
ELB improved by 0.112457
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.749
ELB improved by 0.101876
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.652
ELB improved by 0.0971286
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.556
ELB improved by 0.095748
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.461
ELB improved by 0.0956547
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.364
ELB improved by 0.0963766
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.265
ELB improved by 0.0992547
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.159
ELB improved by 0.105738
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.043
ELB improved by 0.115974
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.914
ELB improved by 0.129737
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.765
ELB improved by 0.148338
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.594
ELB improved by 0.171592
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.405
ELB improved by 0.188349
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.225
ELB improved by 0.180549
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.08
ELB improved by 0.145256
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.982
ELB improved by 0.0978037
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.925
ELB improved by 0.057048
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.893
ELB improved by 0.0315418
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.875
ELB improved by 0.0185529
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.862
ELB improved by 0.0124573
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.853
ELB improved by 0.00949509
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.63
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-553.962
ELB improved by 313.668
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.28
ELB improved by 60.6826
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.944
ELB improved by 34.336
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.852
ELB improved by 13.0917
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.2
ELB improved by 5.65214
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.721
ELB improved by 3.47954
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.031
ELB improved by 2.68961
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.543
ELB improved by 2.48823
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.958
ELB improved by 2.58474
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.101
ELB improved by 2.85707
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.867
ELB improved by 3.23369
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.248
ELB improved by 3.61962
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.4
ELB improved by 3.84798
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.671
ELB improved by 3.72862
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.44
ELB improved by 3.23062
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.92
ELB improved by 2.51994
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.126
ELB improved by 1.7943
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.906
ELB improved by 1.22057
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.051
ELB improved by 0.854296
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.405
ELB improved by 0.646038
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.876
ELB improved by 0.529478
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.415
ELB improved by 0.461009
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.997
ELB improved by 0.417564
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.61
ELB improved by 0.387311
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.246
ELB improved by 0.363979
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.902
ELB improved by 0.344216
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.575
ELB improved by 0.326357
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.266
ELB improved by 0.309774
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.971
ELB improved by 0.294449
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.69
ELB improved by 0.280681
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.422
ELB improved by 0.268862
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.162
ELB improved by 0.259352
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.91
ELB improved by 0.252398
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.662
ELB improved by 0.248099
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.415
ELB improved by 0.246378
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.168
ELB improved by 0.246957
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.919
ELB improved by 0.249354
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.666
ELB improved by 0.252965
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.409
ELB improved by 0.257256
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.147
ELB improved by 0.262045
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.879
ELB improved by 0.267851
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.602
ELB improved by 0.276478
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.31
ELB improved by 0.292379
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.984
ELB improved by 0.325705
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.589
ELB improved by 0.395651
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.076
ELB improved by 0.512434
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.477
ELB improved by 0.598915
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.938
ELB improved by 0.539272
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.537
ELB improved by 0.400956
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.252
ELB improved by 0.285572
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.045
ELB improved by 0.206675
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.893
ELB improved by 0.151946
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.78
ELB improved by 0.112437
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.697
ELB improved by 0.0835061
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.634
ELB improved by 0.0624549
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.587
ELB improved by 0.0473246
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.551
ELB improved by 0.0365459
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.522
ELB improved by 0.0288795
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.498
ELB improved by 0.0233928
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.479
ELB improved by 0.0194141
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.462
ELB improved by 0.016475
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.448
ELB improved by 0.0142551
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.436
ELB improved by 0.0125372
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.424
ELB improved by 0.0111752
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.414
ELB improved by 0.0100699
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.405
ELB improved by 0.00915411
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-870.408
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.423
ELB improved by 294.985
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.117
ELB improved by 55.3062
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.304
ELB improved by 38.8123
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.034
ELB improved by 20.2707
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.079
ELB improved by 9.95492
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.551
ELB improved by 6.5273
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.311
ELB improved by 6.24017
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.471
ELB improved by 6.84049
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.755
ELB improved by 7.71556
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.481
ELB improved by 8.27429
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.77
ELB improved by 7.71121
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.738
ELB improved by 6.03212
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.544
ELB improved by 4.19371
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.741
ELB improved by 2.80254
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.854
ELB improved by 1.88706
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.544
ELB improved by 1.31051
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.594
ELB improved by 0.94939
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.876
ELB improved by 0.718408
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.311
ELB improved by 0.564858
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.853
ELB improved by 0.45825
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.472
ELB improved by 0.381339
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.147
ELB improved by 0.324213
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.866
ELB improved by 0.280925
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.619
ELB improved by 0.247695
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.397
ELB improved by 0.221962
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.195
ELB improved by 0.201865
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.009
ELB improved by 0.18597
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.836
ELB improved by 0.17316
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.673
ELB improved by 0.162608
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.519
ELB improved by 0.153776
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.373
ELB improved by 0.14636
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.233
ELB improved by 0.140183
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.098
ELB improved by 0.135094
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.967
ELB improved by 0.130915
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.839
ELB improved by 0.127447
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.715
ELB improved by 0.124493
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.593
ELB improved by 0.121885
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.473
ELB improved by 0.119496
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.356
ELB improved by 0.117251
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.241
ELB improved by 0.115117
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.128
ELB improved by 0.113094
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.017
ELB improved by 0.111205
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.907
ELB improved by 0.10948
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.799
ELB improved by 0.107953
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.693
ELB improved by 0.106653
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.587
ELB improved by 0.105603
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.482
ELB improved by 0.104817
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.378
ELB improved by 0.104297
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.274
ELB improved by 0.104031
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.17
ELB improved by 0.103989
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.066
ELB improved by 0.104125
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.961
ELB improved by 0.104367
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.857
ELB improved by 0.104618
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.752
ELB improved by 0.104751
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.647
ELB improved by 0.104618
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.543
ELB improved by 0.104051
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.441
ELB improved by 0.102882
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.34
ELB improved by 0.100962
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.241
ELB improved by 0.0981844
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.147
ELB improved by 0.0945102
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.057
ELB improved by 0.0899769
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.972
ELB improved by 0.084701
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.893
ELB improved by 0.0788643
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.821
ELB improved by 0.0726907
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.754
ELB improved by 0.0664184
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.694
ELB improved by 0.0602736
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.64
ELB improved by 0.0544489
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.59
ELB improved by 0.049091
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.546
ELB improved by 0.0442933
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.506
ELB improved by 0.040096
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.47
ELB improved by 0.036488
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.436
ELB improved by 0.0334119
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.405
ELB improved by 0.030772
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.377
ELB improved by 0.0284469
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.351
ELB improved by 0.0263079
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.326
ELB improved by 0.0242425
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.304
ELB improved by 0.022175
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.284
ELB improved by 0.0200792
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.266
ELB improved by 0.0179753
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.25
ELB improved by 0.0159142
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.236
ELB improved by 0.013956
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.224
ELB improved by 0.0121525
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.214
ELB improved by 0.0105373
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.204
ELB improved by 0.00912388
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.231 0.154 2.374
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.060 | 0.000 | 0.061 | |
| getPIPs | 0.048 | 0.008 | 0.056 | |
| graper | 0.088 | 0.000 | 0.089 | |
| makeExampleData | 0.010 | 0.000 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.012 | 0.000 | 0.012 | |
| plotELBO | 0.223 | 0.012 | 0.234 | |
| plotGroupPenalties | 0.755 | 0.016 | 0.770 | |
| plotPosterior | 0.479 | 0.000 | 0.479 | |
| predict.graper | 2.055 | 0.020 | 2.076 | |
| print.graper | 0.050 | 0.004 | 0.054 | |